CX672509

Overview
NameCX672509
Unique NameCX672509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = -1
Query:  242 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSI 670
            +E L+ +D++S++  L+  T+HLIN E +  MK   ++VN +RG VIDE A+ + L+   +   GLDVFE EP +   L  M   + +PH+ + S  TR+ M  L   N     K   + G    + P L     P  + P +
Sbjct:  212 EEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSMSQVLGLPHMGTHSVETRKKMEELVVENA----KNVILTGKVLTIVPELQNEDWPNESKPLV 350          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = -1
Query:  323 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 679
            + +D +L ++D I L   L   TYH+I +     MK  AI VN SRG  +DE AL+  L++  +   GLDV+E EP  +   L ++ N  ++PHI SA+   R  M   AA N+L  I+G
Sbjct:  195 AELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDNVTLLPHIGSATAKVRFNMCKQAAENMLAAIQG 314          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 37/115 (32.17%), Postives = 69/115 (60.00%), Query Frame = -1
Query:  329 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKI 673
            ++ +L+ AD ++++   + + +H I+K +   MK  + L+N SRGP++ E ALV+ LK   +    LDVFE EP +   L  + N ++ PHI +A+  +R+ M+ + A + + K+
Sbjct:  194 LETLLKNADFVTINAAYNPSLHHQIDKAQFEMMKPTSYLINASRGPIVHEKALVQALKDKEIEGAALDVFEFEPEINDELKTLDNVVITPHIGNATFESRDMMSKIVANDTISKL 308          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = -1
Query:  323 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 676
            S D+ +  AD +SLH  L   T  + N E  + MKK   L+N +RG VIDE ALV  L    + +  LDVF +EP  K   L + +N  V PH+ +++K  +EG+A   A  V G +KG
Sbjct:  268 SFDQAISTADFVSLHMPLTPATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKG 386          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = -1
Query:  317 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP 673
            +D +  EAD I+LH      T +LIN E LA MK  A ++NCSRG +IDE ALV  ++   +    LDVF  EP  +  L E  N I+ PH+ ++++  +  +A   A  +   + G P
Sbjct:  215 LDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTAIETAQIGGAALDVFAQEPLGESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVLLGLP 333          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: DHGY_METEA (Glycerate dehydrogenase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=hprA PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  317 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL---SEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP 673
            ++ +L ++DVI+LH  L   T ++I  E+L  MK+ AIL+N +RG ++DE AL++ LK   +   G DV   EP     +   +++ N IV PH+A ASK   + +A     NV   + G P
Sbjct:  187 LETILTQSDVITLHVPLTPDTKNMIGAEQLKKMKRSAILINTARGGLVDEAALLQALKDGTIGGAGFDVVAQEPPKDGNILCDADLPNLIVTPHVAWASKEAMQILADQLVDNVEAFVAGKP 308          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: PDXB_VIBVY (Erythronate-4-phosphate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=pdxB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  395 SSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 679
            +S+D +L+EADVI+LH  + +     T+HLINKE L +++ + IL+N +RGPV+D  AL   L+Q   F   LDVFE EP +   L  +  A   PH+A
Sbjct:  160 TSLDRLLQEADVITLHTPITRDGKYPTHHLINKEILNSLRADQILINAARGPVVDNQALKHRLQQADGFTAALDVFEFEPEVDMELLPLL-AFATPHVA 257          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: PDXB_PSYWF (Erythronate-4-phosphate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=pdxB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = -1
Query:  368 SSMDEVLREADVISLHPVLDKT------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG 679
            +S+++VL ++DVISLH  L  T      TYH+I+ + LA M    +L+N SRG V+ E  L+  L QNP  +V LDVFE+EP +   L + K  +  PHIA    +T EG
Sbjct:  171 ASVEKVLAQSDVISLHVPLTLTGHSELPTYHMIDADALAKMPSTTMLINTSRGAVVSEADLLADLNQNPERQVVLDVFENEPTVSAELLD-KLTLATPHIAG---YTLEG 276          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: PDXB_VIBVU (Erythronate-4-phosphate dehydrogenase OS=Vibrio vulnificus GN=pdxB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = -1
Query:  395 SSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 679
            +S+D +L+EADVI+LH  + +     T+HLIN+E L +++ + IL+N +RGPV+D  AL   L+Q   F   LDVFE EP +   L  +  A   PH+A
Sbjct:  160 TSLDRLLQEADVITLHTPITRDGKYPTHHLINEEILNSLRADQILINAARGPVVDNQALKRRLQQADGFMAALDVFEFEPEVDMELLPLL-AFATPHVA 257          
BLAST of CX672509 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  287 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN--QVEP 670
            D +L  +DVI++H    K T  LI K +   MK   I+VN +RG ++DE AL E +K   +    LDV+E EP      L ++ N +  PHIA++++  +  +  + A +++   KG P+    N   +EP
Sbjct:  188 DTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNMAKGLPVRNAVNLPSIEP 318          
The following BLAST results are available for this feature:
BLAST of CX672509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 150
Match NameE-valueIdentityDescription
YN14_YEAST4.220e-1532.87Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
TKRA_BACSU5.511e-1538.33Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
Y606_STAS11.603e-1432.17Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
SERA_ARATH4.665e-1439.50D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_SYNY37.958e-1436.97D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
DHGY_METEA1.039e-1336.07Glycerate dehydrogenase OS=Methylobacterium extorq... [more]
PDXB_VIBVY1.357e-1343.43Erythronate-4-phosphate dehydrogenase OS=Vibrio vu... [more]
PDXB_PSYWF2.315e-1342.73Erythronate-4-phosphate dehydrogenase OS=Psychroba... [more]
PDXB_VIBVU3.950e-1342.42Erythronate-4-phosphate dehydrogenase OS=Vibrio vu... [more]
SERA_ARCFU5.158e-1332.82D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_17D08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17D08-G15-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672509 ID=CX672509; Name=CX672509; organism=Citrus sinensis; type=EST; length=691bp
TTTTTTTAAGATACAGCATAAAATGTGAAATTATGAAGCCAGTCAATACA
ACACAACTGCGCGAAAGCACGTACGTACATGGTTGTTAATGCTTCTCATA
ATGAAAATTTTGAACACTCACATCAAATTACACTTCAAACTTAGTAAGGT
GCTCTCTATGCACACCATTAGGCTCCAATGTGGTGAAGCTTCCGAGAGCT
TAAAGCCTTGAAACCGGCAAACCCAATGCCTTTGAGTTCACAATACTTGG
ACTTGCAGCAGGAGGCTGAGCATTCTCGTTCAAGAATGGTTCTACTTGAT
TTGGGTTACCCCATATGGGGTATCCTTTGATCTTTCCCAGGACATTCAGA
GCAGCAAGGGTTGCCATTCCTTCACGAGTCCACTTGGACGCGGAAGCAAT
GTGAGGTACCACGATGGCGTTCTTCATTTCAGAGAGTCCAGGCTTCATGT
AAGGCTCATCCTCAAAGACATCAAGACCAACACGAAACATTGGATTTTGT
TTCAAATGCTCCACCAGAGCTACTTCATCAATCACGGGACCCCTACTGCA
GTTGACAAGAATCGCTTCCTTCTTCATCGTTGCAAGCCTTTCTTTGTTGA
TCAAATGGTAAGTGGTTTTATCCAAGACTGGATGAAGACTTATCACATCT
GCTTCTCGAAGCACCTCATCCATGGACGAGGCTCTTTTCCA
back to top