CX672497

Overview
NameCX672497
Unique NameCX672497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 59/149 (39.60%), Postives = 83/149 (55.70%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV+  ++G KGT+ F+ EG GPT V GS+SGL PG H   +H  G+ +N  +STGP + PA  +           G L N+T  ++G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV++ + G  GT+ F+ +G  PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F +  K IPL+G  S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 62/149 (41.61%), Postives = 82/149 (55.03%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV+ GT+  KGT+ FS EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP F P G +           G L N+T   +G+    I  + IPL+G +S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLAGTDV-KGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 149          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV++ +    GT+ FS +G  PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  + IPL+G  S+IGRG+VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 58/149 (38.93%), Postives = 80/149 (53.69%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV++ + G  GT+ F+    GPTTV G +SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+ V  +G  +F I  + IPL+G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 60/149 (40.27%), Postives = 80/149 (53.69%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AV V+  +   KGT+ F  EG GPTTV GS+SGL PG H   IH  G+ +N  +STGP + PAG +           G L N+T   +G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 60/149 (40.27%), Postives = 80/149 (53.69%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AV V+  +   KGT+ F  EG GPTTV GS+SGL PG H   IH  G+ +N  +STGP + PAG +           G L N+T   +G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20
Identity = 63/150 (42.00%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V AVAV++ + G  GT+ FS E  G PTTV G LSGL PG H   +H  G+ +N  +STGP + P G D           G L N+TV  +G A F I  K IPL G  S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    2 VKAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 151          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 56/128 (43.75%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    2 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 349
            V AV V++G+ G  G + F+ E  GPTTV G LSGL PG H   +H  G+ +N  +STGP + PA  +           G L N+TV  +G A F I  K IPL G+ S+IGR +VVH+ P  D G G
Sbjct:    2 VKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPD-DLGKG 128          
BLAST of CX672497 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.477e-20
Identity = 60/146 (41.10%), Postives = 79/146 (54.11%), Query Frame = 2
Query:   11 VAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 373
            V V+  + G KGT+ F+ EG+G TTV G++SGL PG H   +H  G+ +N  +STGP F P G             G L NITV  +G ATF I  + IPL G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    5 VRVLNSSEGVKGTIFFTQEGNGTTTVTGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPEGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDSQIPLDGPNSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVACGIIGL 150          
The following BLAST results are available for this feature:
BLAST of CX672497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC5_MAIZE5.365e-2139.60Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_NICPL7.007e-2140.27Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC2_MAIZE9.151e-2141.61Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_CAPAN1.195e-2040.94Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC_CARPA1.561e-2038.93Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC1_ORYSJ2.039e-2040.27Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI2.039e-2040.27Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_SOLCS2.663e-2042.00Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_PANGI3.477e-2043.75Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC1_BRAJU3.477e-2041.10Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C12-E23-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672497 ID=CX672497; Name=CX672497; organism=Citrus sinensis; type=EST; length=618bp
GGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGTCGCAAGGGAACTG
TTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGTGAAAGGAAGCCTC
TCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTCACACTTACGGAAA
CATAAGCAATGATTGGATATCAACTGGACCCCCTTTTAAACCTGCTGGAG
CTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGAGGGTATTGCTACT
TTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAAATTCCGTTATTGG
AAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGATCCTGGTGATGGAG
TAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGGCTTCTCTCCATAC
CATAATAAATACATTTGACATGATGTCGAATGTGTCTTGAATACTTAATA
AAATAAATAATATGTTGTACGAATCAAAATCTGGCTATAATAAAATAAAT
AAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGTAGAATGTGGCCGT
AAATAAAATAAATAAAAGTCCAGGCGTGCTGTGCACTGTCCTTAAGACTA
TTTCTACTCCTTAAAAAA
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