CX672496

Overview
NameCX672496
Unique NameCX672496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.397e-16
Identity = 56/148 (37.84%), Postives = 76/148 (51.35%), Query Frame = -2
Query:  244 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 612
            AVAV+ GT+  +G V+ + +  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P               G L NI   +EG+A   I  K IPLSG NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   62 AVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 209          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.397e-16
Identity = 55/148 (37.16%), Postives = 77/148 (52.03%), Query Frame = -2
Query:  244 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIA-TFEIYKTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 612
            AVAV+ GT+  +G V+ + + SGPTTV   ++GL PG H   +H +G+ +N  ISTGP F P               G L NI   ++G+A T  +   IPL+G NSV+GR  VVH             S  + + G  +A G IGL+
Sbjct:   67 AVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLT 214          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.824e-16
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = -2
Query:  244 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 612
            AVAV+ GT+  +G V+ + E  GPTTV   ++GL PG H   +H +G+ +N  ISTGP F P G             G L NI   ++G+A   I    IPL+G N+V+GR  VVH             S  + + G  +A G +GL+
Sbjct:   71 AVAVLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLT 218          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = -2
Query:  298 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHS 618
            + AVAVI G N  KG++ F  + +G T VKG ++GL PG H   IH  G+ +N   STGP F P   D           G L N+   ++G+A   +  T IPLSG +S++GR +VVH+
Sbjct:    4 IKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHA 122          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.064e-16
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = -2
Query:  271 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP-----AGAD------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 618
            + AV V+ GT    GTV F     GP T+KGS++GL PG H   +H +G+ +N  IS GP + P      G D      G L N+     G+A FEI  + + LSG  S+IGR LVVH     D G G
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEK-EDDLGKG 127          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 57/148 (38.51%), Postives = 75/148 (50.68%), Query Frame = -2
Query:  244 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 612
            AVAV+ G +  +G V+ + E   PTTV   ++GL PG H   +H YG+ +N  ISTGP F P     GA        G L NI   + G+A   I    IPL+G NSVIGR LVVH             S  + + G  +A G +GL+
Sbjct:   53 AVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLT 200          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 54/148 (36.49%), Postives = 76/148 (51.35%), Query Frame = -2
Query:  244 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP------AGAD-----GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 612
            AVAV+ G +  +G V+ S +  GPTTV   ++GL PG H   +H YG+ +N  +STG  F P      A  D     G L NI   ++G+A   +    IPL+G NSV+GR LVVH             S  + + G  +A G +GL+
Sbjct:   68 AVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 215          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 57/148 (38.51%), Postives = 74/148 (50.00%), Query Frame = -2
Query:  244 AVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 612
            AVAV+ GT+   G V+   E  GPTTV   ++GL PG H   +H YG+ +N  ISTG  F P     GA        G L NI    +G+A   I    IPLSG+NSV+GR  VVH             S  + + G  +A G +GL+
Sbjct:   67 AVAVLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 214          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.489e-14
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = -2
Query:  244 KGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPA----GAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVH-------------SSPSPDPGDGVAWGTIGLS 579
            +G V+ S E +GPTTVK  L+GL PG H   +H +G+ +N  +STG  F P     GA        G L NI   S+G+A   I    IPLSG +SVIGR LVVH             S  + + G  +A G +GL+
Sbjct:    3 EGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 139          
BLAST of CX672496 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.107e-13
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = -2
Query:  271 VNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKP----AGAD-------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 618
            + AV V+ G+   KGT++F  +  G  TV G +SGL PG H   IH YG+++N   S+G  F P     GA        G L NIT  S G+AT  I  + I L+G +S+IGR +VVH+    D G G
Sbjct:    3 IKAVCVLVGSV--KGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAG-EDDLGKG 127          
The following BLAST results are available for this feature:
BLAST of CX672496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODCP_ORYSJ1.397e-1637.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_ARATH1.397e-1637.16Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_SOLCS1.824e-1636.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC2_MESCR2.383e-1640.34Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]
SODC_PRIGL4.064e-1640.63Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODCP_MEDSA3.441e-1538.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_SOLLC4.494e-1536.49Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_ZANAE1.001e-1438.51Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODCP_PINSY6.489e-1439.42Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODC_HALRO1.107e-1340.63Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C12-E23-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672496 ID=CX672496; Name=CX672496; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTAAGGAGTAGAAATAGTCTTAAGGACAGTGCACAGCACGCCTGG
ACTTTTATTTATTTTATTTACGGCCACATTCTACAAGGTACAACATATTA
CAGACATGCCCTGGCTTTTATTTATTTTATTATAGCCAGATTTTGATTCG
TACAACATATTATTTATTTTATTAAGTATTCAAGACACATTCGACATCAT
GTCAAATGTATTTATTATGGTATGGAGAGAAGCCCCTTCAATAACTGAGA
CCGATGGTGCCCCAAGCTACTCCATCACCAGGATCTGGACTGGGACTTGA
GTGGACTACAAGACCCCTTCCAATAACGGAATTTGTTCCAGAAAGAGGAA
TCGTCTTGTAAATTTCAAAAGTAGCAATACCCTCACTAGTAACAGTGATG
TTTTCTAAAAAACCGTCAGCTCCAGCAGGTTTAAAAGGGGGTCCAGTTGA
TATCCAATCATTGCTTATGTTTCCGTAAGTGTGAATAATGAGTGCGTGAT
CACCAGGCGGCAAACCAGAGAGGCTTCCTTTCACAGTTGTTGGACCACTT
CCTTCAACGCTAAAGGAAACAGTTCCCTTGCGACCGTTAGTTCCAGTAAT
AACTGCAACTGCATTCACCCCT
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