CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SYNWW (30S ribosomal protein S13 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpsM PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.247e-25 Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P DKR+E SL +++GIGRS + +IL D I + K+LT E++ LRE + + Y DLRR + D++RL+D+ CYRGIRH +GLP RGQ T TNARTRKG + GKKK Sbjct: 3 RIAGVDLPRDKRIEVSLTYIFGIGRSSSRKILTDAGINPDTRVKDLTEEEVSKLREIIEKEYHVEGDLRRQVNMDIKRLMDLGCYRGIRHRRGLPVRGQNTKTNARTRKGPKRTAGGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.247e-25 Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 R+ N EIPN+KR+ SL ++YGIGR+ A +I I + K+L+ +L+++RE Y+T DLRR + +++RL++++CYRGIRH +GLP RGQ T +NARTRKG R + GKK Sbjct: 3 RILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MYCS5 (30S ribosomal protein S13 OS=Mycoplasma synoviae (strain 53) GN=rpsM PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.629e-25 Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 R+ N EIPN+KR+ SL ++YGIG+S A +I N+ N T ELT +L+ LRE Y T DLRR + +++R ++I+CYRGIRH +GLP RGQ T NARTRKG R + GKK Sbjct: 3 RILNIEIPNNKRVVISLTYIYGIGKSLASEICKKANVDENTKTAELTEAQLSKLREVAKAYTTEGDLRREVTLNIKRYMEIKCYRGIRHRKGLPVRGQSTQKNARTRKGPRKTVAGKK 120
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MYCMO (30S ribosomal protein S13 OS=Mycoplasma mobile GN=rpsM PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.629e-25 Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 R+ N EIPN+KR+ SL +VYGIGRS + QIL + NI + K+L+ +L +R SR+ T DLRR I+ +++RL++I+ YRGIRH +GLP RGQ T NARTRKG R + GKK Sbjct: 3 RILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIASRFTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEPX (30S ribosomal protein S13 OS=Thermoanaerobacter sp. (strain X514) GN=rpsM PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25 Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P DKR+E +L ++YGIGRSR+++IL + + K+LT E++ LRE + + Y DLR+ + +++RL+DI CYRGIRH +GLP RGQRT TNARTRKG R + KKK Sbjct: 3 RIAGVDLPRDKRVEIALTYIYGIGRSRSNEILAKAGVNPDTRVKDLTEEEVSRLREIIDKEYKVEGDLRKEVAMNIKRLMDIGCYRGIRHKRGLPVRGQRTRTNARTRKGPRKTVAKKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEP3 (30S ribosomal protein S13 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsM PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25 Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P DKR+E +L ++YGIGRSR+++IL + + K+LT E++ LRE + + Y DLR+ + +++RL+DI CYRGIRH +GLP RGQRT TNARTRKG R + KKK Sbjct: 3 RIAGVDLPRDKRVEIALTYIYGIGRSRSNEILAKAGVNPDTRVKDLTEEEVSRLREIIDKEYKVEGDLRKEVAMNIKRLMDIGCYRGIRHKRGLPVRGQRTRTNARTRKGPRKTVAKKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STRGG (30S ribosomal protein S13 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsM PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25 Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = -2 Query: 100 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKP 456 RV +IP +KR+E +L +V+GIGR+R+ +IL + N ++L +L +RE V L E DLRR ++ ++ R V+I CY+GIRH +GLP GQRTSTNARTRKG R AI GKKKP Sbjct: 3 RVSGVDIPREKRVEVALTYVFGIGRTRSKEILASTGVNPNTRVRDLAEEDLVKIREHVDANLRTEGDLRREVQANIRRKVEIGCYQGIRHRRGLPVHGQRTSTNARTRKGPRRAIAGKKKP 123
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_GRABC (30S ribosomal protein S13 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsM PE=3 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25 Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456 R+ IP +KR+ SL+++YGIG ++A +I +L+I + + +L+ E+ +RE + R Y DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK TR Sbjct: 3 RIAGVNIPTNKRVAISLRYIYGIGPAQAQKICTELSIPDERRVNQLSDDEILRIRELIDREYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEFY (30S ribosomal protein S13 OS=Thermobifida fusca (strain YX) GN=rpsM PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25 Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456 R+ ++P DKR+E +L +VYGIGRSRA + L + + + +LT EL LRE + + Y DLRR + D+ R ++I CY+GIRH +GLP RGQRT TNARTRKGK+ + GKKK R Sbjct: 3 RIAGVDLPRDKRVEVALTYVYGIGRSRAAETLANTGVNPDTRVYQLTEEELVKLREWIDANYKVEGDLRREVAADIRRKIEIGCYQGIRHRRGLPVRGQRTQTNARTRKGKKKTVAGKKKAGR 125
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEEB (30S ribosomal protein S13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsM PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25 Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 100 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKP 456 R+ ++P DKR+E +L ++YGIG +R+ +IL + + T++LT ++ +LR + Y DLRR +++RL+DI CYRG RH GLP RGQRT TNARTR+G R + GKKKP Sbjct: 3 RIAGVDLPRDKRIEIALTYIYGIGLTRSKEILAKTGVNPDTRTRDLTDADIAALRAAIDEYQVEGDLRRLEAMNIKRLMDIGCYRGRRHRLGLPVRGQRTRTNARTRRGSRRTVAGKKKP 122 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |