CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SYNWW (30S ribosomal protein S13 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpsM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.247e-25
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P DKR+E SL +++GIGRS + +IL D  I  +   K+LT  E++ LRE + + Y    DLRR +  D++RL+D+ CYRGIRH +GLP RGQ T TNARTRKG +    GKKK
Sbjct:    3 RIAGVDLPRDKRIEVSLTYIFGIGRSSSRKILTDAGINPDTRVKDLTEEEVSKLREIIEKEYHVEGDLRRQVNMDIKRLMDLGCYRGIRHRRGLPVRGQNTKTNARTRKGPKRTAGGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.247e-25
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = -2
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456
            R+ N EIPN+KR+  SL ++YGIGR+ A +I     I   +  K+L+  +L+++RE    Y+T  DLRR +  +++RL++++CYRGIRH +GLP RGQ T +NARTRKG R  + GKK
Sbjct:    3 RILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MYCS5 (30S ribosomal protein S13 OS=Mycoplasma synoviae (strain 53) GN=rpsM PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.629e-25
Identity = 60/118 (50.85%), Postives = 79/118 (66.95%), Query Frame = -2
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456
            R+ N EIPN+KR+  SL ++YGIG+S A +I    N+  N  T ELT  +L+ LRE    Y T  DLRR +  +++R ++I+CYRGIRH +GLP RGQ T  NARTRKG R  + GKK
Sbjct:    3 RILNIEIPNNKRVVISLTYIYGIGKSLASEICKKANVDENTKTAELTEAQLSKLREVAKAYTTEGDLRREVTLNIKRYMEIKCYRGIRHRKGLPVRGQSTQKNARTRKGPRKTVAGKK 120          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MYCMO (30S ribosomal protein S13 OS=Mycoplasma mobile GN=rpsM PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.629e-25
Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = -2
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456
            R+ N EIPN+KR+  SL +VYGIGRS + QIL + NI   +  K+L+  +L  +R   SR+ T  DLRR I+ +++RL++I+ YRGIRH +GLP RGQ T  NARTRKG R  + GKK
Sbjct:    3 RILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIASRFTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEPX (30S ribosomal protein S13 OS=Thermoanaerobacter sp. (strain X514) GN=rpsM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P DKR+E +L ++YGIGRSR+++IL    +  +   K+LT  E++ LRE + + Y    DLR+ +  +++RL+DI CYRGIRH +GLP RGQRT TNARTRKG R  +  KKK
Sbjct:    3 RIAGVDLPRDKRVEIALTYIYGIGRSRSNEILAKAGVNPDTRVKDLTEEEVSRLREIIDKEYKVEGDLRKEVAMNIKRLMDIGCYRGIRHKRGLPVRGQRTRTNARTRKGPRKTVAKKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEP3 (30S ribosomal protein S13 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rpsM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P DKR+E +L ++YGIGRSR+++IL    +  +   K+LT  E++ LRE + + Y    DLR+ +  +++RL+DI CYRGIRH +GLP RGQRT TNARTRKG R  +  KKK
Sbjct:    3 RIAGVDLPRDKRVEIALTYIYGIGRSRSNEILAKAGVNPDTRVKDLTEEEVSRLREIIDKEYKVEGDLRKEVAMNIKRLMDIGCYRGIRHKRGLPVRGQRTRTNARTRKGPRKTVAKKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STRGG (30S ribosomal protein S13 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 61/121 (50.41%), Postives = 82/121 (67.77%), Query Frame = -2
Query:  100 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKP 456
            RV   +IP +KR+E +L +V+GIGR+R+ +IL    +  N   ++L   +L  +RE V   L  E DLRR ++ ++ R V+I CY+GIRH +GLP  GQRTSTNARTRKG R AI GKKKP
Sbjct:    3 RVSGVDIPREKRVEVALTYVFGIGRTRSKEILASTGVNPNTRVRDLAEEDLVKIREHVDANLRTEGDLRREVQANIRRKVEIGCYQGIRHRRGLPVHGQRTSTNARTRKGPRRAIAGKKKP 123          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_GRABC (30S ribosomal protein S13 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsM PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = -2
Query:   94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456
            R+    IP +KR+  SL+++YGIG ++A +I  +L+I + +   +L+  E+  +RE + R Y    DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK TR
Sbjct:    3 RIAGVNIPTNKRVAISLRYIYGIGPAQAQKICTELSIPDERRVNQLSDDEILRIRELIDREYRVEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEFY (30S ribosomal protein S13 OS=Thermobifida fusca (strain YX) GN=rpsM PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = -2
Query:   94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456
            R+   ++P DKR+E +L +VYGIGRSRA + L +  +  +    +LT  EL  LRE + + Y    DLRR +  D+ R ++I CY+GIRH +GLP RGQRT TNARTRKGK+  + GKKK  R
Sbjct:    3 RIAGVDLPRDKRVEVALTYVYGIGRSRAAETLANTGVNPDTRVYQLTEEELVKLREWIDANYKVEGDLRREVAADIRRKIEIGCYQGIRHRRGLPVRGQRTQTNARTRKGKKKTVAGKKKAGR 125          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THEEB (30S ribosomal protein S13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.629e-25
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  100 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKP 456
            R+   ++P DKR+E +L ++YGIG +R+ +IL    +  +  T++LT  ++ +LR  +  Y    DLRR    +++RL+DI CYRG RH  GLP RGQRT TNARTR+G R  + GKKKP
Sbjct:    3 RIAGVDLPRDKRIEIALTYIYGIGLTRSKEILAKTGVNPDTRTRDLTDADIAALRAAIDEYQVEGDLRRLEAMNIKRLMDIGCYRGRRHRLGLPVRGQRTRTNARTRRGSRRTVAGKKKP 122          
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_SYNWW1.247e-2549.1730S ribosomal protein S13 OS=Syntrophomonas wolfei... [more]
RS13_MYCAP1.247e-2547.4630S ribosomal protein S13 OS=Mycoplasma agalactiae... [more]
RS13_MYCS51.629e-2550.8530S ribosomal protein S13 OS=Mycoplasma synoviae (... [more]
RS13_MYCMO1.629e-2551.6930S ribosomal protein S13 OS=Mycoplasma mobile GN=... [more]
RS13_THEPX2.127e-2548.3330S ribosomal protein S13 OS=Thermoanaerobacter sp... [more]
RS13_THEP32.127e-2548.3330S ribosomal protein S13 OS=Thermoanaerobacter ps... [more]
RS13_STRGG2.127e-2550.4130S ribosomal protein S13 OS=Streptomyces griseus ... [more]
RS13_GRABC2.127e-2548.7830S ribosomal protein S13 OS=Granulibacter bethesd... [more]
RS13_THEFY2.778e-2548.7830S ribosomal protein S13 OS=Thermobifida fusca (s... [more]
RS13_THEEB3.629e-2545.8330S ribosomal protein S13 OS=Thermosynechococcus e... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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