CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACSU (30S ribosomal protein S13 OS=Bacillus subtilis GN=rpsM PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP DKR+  SL +++GIGR+ A Q+L +  +      ++LT  EL  +R+ + +     DLRR +  +++RL++I  YRGIRH +GLP RGQ +  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACCQ (30S ribosomal protein S13 OS=Bacillus cereus (strain Q1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP DKR+  SL +V+GIGR+ A +IL +  +  +   ++LT  EL  +R+ + R     DLRR +  +++RL++I  YRG+RH +GLP RGQ +  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACCN (30S ribosomal protein S13 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP DKR+  SL +V+GIGR+ A +IL +  +  +   ++LT  EL  +R+ + R     DLRR +  +++RL++I  YRG+RH +GLP RGQ +  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACC7 (30S ribosomal protein S13 OS=Bacillus cereus (strain AH187) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP DKR+  SL +V+GIGR+ A +IL +  +  +   ++LT  EL  +R+ + R     DLRR +  +++RL++I  YRG+RH +GLP RGQ +  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACC1 (30S ribosomal protein S13 OS=Bacillus cereus (strain ATCC 10987) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP DKR+  SL +V+GIGR+ A +IL +  +  +   ++LT  EL  +R+ + R     DLRR +  +++RL++I  YRG+RH +GLP RGQ +  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ARCB4 (30S ribosomal protein S13 OS=Arcobacter butzleri (strain RM4018) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++PN KR+E +L ++YGIG   +  IL  + I  NK   ELT  E  ++R+E+   Y+   DLR+ +  D++ L+D+  YRG+RH +GLPCRGQ+T TNARTRKGK+  +    K
Sbjct:    3 RIAGVDLPNKKRMEYALTYIYGIGLHNSRLILNAVGIDFNKRAFELTEDEAAAIRKEIQENYMVEGDLRKKVAMDIKSLMDLGSYRGLRHRKGLPCRGQKTKTNARTRKGKKKTVGAATK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AERS4 (30S ribosomal protein S13 OS=Aeromonas salmonicida (strain A449) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+GR+R+  I     I  N   K+L   ++ SLRE+V ++    DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGINIPDHKHAVIALTAIYGVGRTRSKAICAAAGIAENVKIKDLDEAQIESLREQVGKFTVEGDLRRQISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKAI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AERHH (30S ribosomal protein S13 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+GR+R+  I     I  N   K+L   ++ SLRE+V ++    DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGINIPDHKHAVIALTAIYGVGRTRSKAICAAAGIAENVKIKDLDEAQIESLREQVGKFTVEGDLRRQISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKAI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ACIAD (30S ribosomal protein S13 OS=Acinetobacter sp. (strain ADP1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP++K    SL +++G+GR  A  IL  + IG     +EL   +L+++R EV++  T  DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGVNIPDNKHAVISLTYIFGVGRHTAKSILAAVGIGPTTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_VIBPA (30S ribosomal protein S13 OS=Vibrio parahaemolyticus GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YGIG++R+  IL ++ I   +   ELT  +++ LR+ V++Y    DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHAVIALTAIYGIGKTRSQAILAEVGIAEDVKISELTEEQIDQLRDGVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BACSU1.864e-2142.0230S ribosomal protein S13 OS=Bacillus subtilis GN=... [more]
RS13_BACCQ1.864e-2142.8630S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACCN1.864e-2142.8630S ribosomal protein S13 OS=Bacillus cereus subsp... [more]
RS13_BACC71.864e-2142.8630S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_BACC11.864e-2142.8630S ribosomal protein S13 OS=Bacillus cereus (stra... [more]
RS13_ARCB41.864e-2143.3330S ribosomal protein S13 OS=Arcobacter butzleri (... [more]
RS13_AERS41.864e-2145.6130S ribosomal protein S13 OS=Aeromonas salmonicida... [more]
RS13_AERHH1.864e-2145.6130S ribosomal protein S13 OS=Aeromonas hydrophila ... [more]
RS13_ACIAD1.864e-2145.6130S ribosomal protein S13 OS=Acinetobacter sp. (st... [more]
RS13_VIBPA2.434e-2143.8630S ribosomal protein S13 OS=Vibrio parahaemolytic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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