CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACSU (30S ribosomal protein S13 OS=Bacillus subtilis GN=rpsM PE=1 SV=3) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 50/119 (42.02%), Postives = 75/119 (63.03%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP DKR+ SL +++GIGR+ A Q+L + + ++LT EL +R+ + + DLRR + +++RL++I YRGIRH +GLP RGQ + NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACCQ (30S ribosomal protein S13 OS=Bacillus cereus (strain Q1) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP DKR+ SL +V+GIGR+ A +IL + + + ++LT EL +R+ + R DLRR + +++RL++I YRG+RH +GLP RGQ + NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACCN (30S ribosomal protein S13 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP DKR+ SL +V+GIGR+ A +IL + + + ++LT EL +R+ + R DLRR + +++RL++I YRG+RH +GLP RGQ + NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACC7 (30S ribosomal protein S13 OS=Bacillus cereus (strain AH187) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP DKR+ SL +V+GIGR+ A +IL + + + ++LT EL +R+ + R DLRR + +++RL++I YRG+RH +GLP RGQ + NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACC1 (30S ribosomal protein S13 OS=Bacillus cereus (strain ATCC 10987) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP DKR+ SL +V+GIGR+ A +IL + + + ++LT EL +R+ + R DLRR + +++RL++I YRG+RH +GLP RGQ + NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGVSEETRVRDLTEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ARCB4 (30S ribosomal protein S13 OS=Arcobacter butzleri (strain RM4018) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++PN KR+E +L ++YGIG + IL + I NK ELT E ++R+E+ Y+ DLR+ + D++ L+D+ YRG+RH +GLPCRGQ+T TNARTRKGK+ + K Sbjct: 3 RIAGVDLPNKKRMEYALTYIYGIGLHNSRLILNAVGIDFNKRAFELTEDEAAAIRKEIQENYMVEGDLRKKVAMDIKSLMDLGSYRGLRHRKGLPCRGQKTKTNARTRKGKKKTVGAATK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AERS4 (30S ribosomal protein S13 OS=Aeromonas salmonicida (strain A449) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+GR+R+ I I N K+L ++ SLRE+V ++ DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R AI Sbjct: 3 RIAGINIPDHKHAVIALTAIYGVGRTRSKAICAAAGIAENVKIKDLDEAQIESLREQVGKFTVEGDLRRQISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKAI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AERHH (30S ribosomal protein S13 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+GR+R+ I I N K+L ++ SLRE+V ++ DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R AI Sbjct: 3 RIAGINIPDHKHAVIALTAIYGVGRTRSKAICAAAGIAENVKIKDLDEAQIESLREQVGKFTVEGDLRRQISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKAI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ACIAD (30S ribosomal protein S13 OS=Acinetobacter sp. (strain ADP1) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.864e-21 Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP++K SL +++G+GR A IL + IG +EL +L+++R EV++ T DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGVNIPDNKHAVISLTYIFGVGRHTAKSILAAVGIGPTTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_VIBPA (30S ribosomal protein S13 OS=Vibrio parahaemolyticus GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YGIG++R+ IL ++ I + ELT +++ LR+ V++Y DLRR + +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHAVIALTAIYGIGKTRSQAILAEVGIAEDVKISELTEEQIDQLRDGVAKYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |