CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THERP (30S ribosomal protein S13 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P DKR+E +L +YGIG + A +IL I ++LT E+ LR+ + + + E DLRR + +++RL+DI CYRG+RH GLP RGQRT TNARTRKG R I KKK Sbjct: 3 RIAGVDLPRDKRIEYALTLIYGIGWTTARKILERTGIDPWTKVRDLTDDEVQRLRDIIEKEMVVEGDLRRQVAMNIKRLIDIGCYRGLRHRMGLPVRGQRTRTNARTRKGPRPRIGVKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STAS1 (30S ribosomal protein S13 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP +KR+ SL +VYGIG + A++I + N+ + K+LT EL +RE V Y DLRR +++RL++I YRGIRH +GLP RGQ+T NARTRKG + KKK Sbjct: 3 RIAGVDIPREKRIVISLTYVYGIGTTTANKIAEEANVSPETRVKDLTDDELGRIREIVDNYKVEGDLRREQNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEDO (30S ribosomal protein S13 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L ++GIGR+RA I I KEL+ +++ LREEV++Y DLRR I +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICASTAIAETAKIKELSEAQIDILREEVAKYSVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHORT (30S ribosomal protein S13 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP++KR+ +L ++YGIGR++A +I I N+ +L+ E+ +RE + S Y DLRR + +++R++D+ CYRG+RH +GLP RGQRT TNARTRKG I GKKK Sbjct: 3 RIAGVNIPSNKRVCIALTYIYGIGRTKAGEICERTGIAENRRVNDLSDDEVVRIREIIDSEYKVEGDLRREVAMNIKRIMDLGCYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHOP5 (30S ribosomal protein S13 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP +KR+ +LQ+++GIG+ A I+ + I ++ +L+ E+ +RE + R Y+ DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG AI GKKK Sbjct: 3 RIAGVNIPTNKRVLIALQYIHGIGQKHAADIVEKVKIPLDRRVNQLSDQEVLQIREVIDRDYMVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MESSB (30S ribosomal protein S13 OS=Mesorhizobium sp. (strain BNC1) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP +KR+ +LQ+++GIG A +I + I ++ +LT E+ ++RE + R Y DLRR + +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG I GKKK Sbjct: 3 RIAGVNIPTNKRVVIALQYIHGIGPKLAREITSKVGIPDDRRVHQLTDAEVLAIREAIDRDYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKPIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_LACF3 (30S ribosomal protein S13 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P DKR+ L +++GIG + A +IL + + + ++LT + +R EV + DLRR + +++RL +I YRG+RH GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILANAGVSEDIRVRDLTPDQEEKIRAEVDQIKVEGDLRREVSLNIKRLQEIGSYRGMRHRHGLPVRGQHTKNNARTRKGKAVAIAGKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_LACAC (30S ribosomal protein S13 OS=Lactobacillus acidophilus GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = -2 Query: 127 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 456 R+ ++P DKR+ +L ++YGIG + A +I D + + +K+LT + LR EV +Y DLRR + +++RLVDI YRGIRH +GLP RGQ T NARTRKG + Sbjct: 3 RIAGVDLPRDKRIVVALTYIYGIGDATAKKICADAGVSEDIRSKDLTPEDQEKLRAEVDKYRVEGDLRREVSMNIKRLVDIGSYRGIRHRRGLPVRGQNTKNNARTRKGTK 113
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CLOPH (30S ribosomal protein S13 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P +KR+E L +VYGIGR +++IL + + ++LT E+ +R+ + + E DLRR I +++RL +I CYRGIRH +GLP RGQ+T TNARTRKG + + KKK Sbjct: 3 RISGVDLPREKRIEIGLTYVYGIGRVSSNRILAKAGVNPDTRVRDLTDEEVAKIRDVIDETMLVEGDLRREIALNIKRLQEIGCYRGIRHRKGLPVRGQKTKTNARTRKGPKRTVANKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CLOB8 (30S ribosomal protein S13 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpsM PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P +KR+E L ++YGIG S + +IL I + K+L+ E+N +R +++ L E DLRR + +++RLV+I YRGIRH +GLP RGQ+T TNARTRKG + I KKK Sbjct: 3 RISGIDLPREKRVEIGLTYIYGIGLSTSQKILAVTGINPDTRVKDLSEEEVNEIRTYINKNLMVEGDLRRDVALNIKRLVEIGSYRGIRHRRGLPVRGQKTKTNARTRKGPKKTIANKKK 122 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |