CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_THERP (30S ribosomal protein S13 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 56/120 (46.67%), Postives = 77/120 (64.17%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P DKR+E +L  +YGIG + A +IL    I      ++LT  E+  LR+ + + +  E DLRR +  +++RL+DI CYRG+RH  GLP RGQRT TNARTRKG R  I  KKK
Sbjct:    3 RIAGVDLPRDKRIEYALTLIYGIGWTTARKILERTGIDPWTKVRDLTDDEVQRLRDIIEKEMVVEGDLRRQVAMNIKRLIDIGCYRGLRHRMGLPVRGQRTRTNARTRKGPRPRIGVKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STAS1 (30S ribosomal protein S13 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 54/119 (45.38%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP +KR+  SL +VYGIG + A++I  + N+  +   K+LT  EL  +RE V  Y    DLRR    +++RL++I  YRGIRH +GLP RGQ+T  NARTRKG    +  KKK
Sbjct:    3 RIAGVDIPREKRIVISLTYVYGIGTTTANKIAEEANVSPETRVKDLTDDELGRIREIVDNYKVEGDLRREQNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEDO (30S ribosomal protein S13 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  ++GIGR+RA  I     I      KEL+  +++ LREEV++Y    DLRR I  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTAIFGIGRTRARAICASTAIAETAKIKELSEAQIDILREEVAKYSVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHORT (30S ribosomal protein S13 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP++KR+  +L ++YGIGR++A +I     I  N+   +L+  E+  +RE + S Y    DLRR +  +++R++D+ CYRG+RH +GLP RGQRT TNARTRKG    I GKKK
Sbjct:    3 RIAGVNIPSNKRVCIALTYIYGIGRTKAGEICERTGIAENRRVNDLSDDEVVRIREIIDSEYKVEGDLRREVAMNIKRIMDLGCYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHOP5 (30S ribosomal protein S13 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG+  A  I+  + I  ++   +L+  E+  +RE + R Y+   DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVLIALQYIHGIGQKHAADIVEKVKIPLDRRVNQLSDQEVLQIREVIDRDYMVEGDLRRETGMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_MESSB (30S ribosomal protein S13 OS=Mesorhizobium sp. (strain BNC1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG   A +I   + I  ++   +LT  E+ ++RE + R Y    DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG    I GKKK
Sbjct:    3 RIAGVNIPTNKRVVIALQYIHGIGPKLAREITSKVGIPDDRRVHQLTDAEVLAIREAIDRDYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKPIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_LACF3 (30S ribosomal protein S13 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P DKR+   L +++GIG + A +IL +  +   +  ++LT  +   +R EV +     DLRR +  +++RL +I  YRG+RH  GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILANAGVSEDIRVRDLTPDQEEKIRAEVDQIKVEGDLRREVSLNIKRLQEIGSYRGMRHRHGLPVRGQHTKNNARTRKGKAVAIAGKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_LACAC (30S ribosomal protein S13 OS=Lactobacillus acidophilus GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  127 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 456
            R+   ++P DKR+  +L ++YGIG + A +I  D  +   + +K+LT  +   LR EV +Y    DLRR +  +++RLVDI  YRGIRH +GLP RGQ T  NARTRKG +
Sbjct:    3 RIAGVDLPRDKRIVVALTYIYGIGDATAKKICADAGVSEDIRSKDLTPEDQEKLRAEVDKYRVEGDLRREVSMNIKRLVDIGSYRGIRHRRGLPVRGQNTKNNARTRKGTK 113          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CLOPH (30S ribosomal protein S13 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P +KR+E  L +VYGIGR  +++IL    +  +   ++LT  E+  +R+ +   +  E DLRR I  +++RL +I CYRGIRH +GLP RGQ+T TNARTRKG +  +  KKK
Sbjct:    3 RISGVDLPREKRIEIGLTYVYGIGRVSSNRILAKAGVNPDTRVRDLTDEEVAKIRDVIDETMLVEGDLRREIALNIKRLQEIGCYRGIRHRKGLPVRGQKTKTNARTRKGPKRTVANKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CLOB8 (30S ribosomal protein S13 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpsM PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P +KR+E  L ++YGIG S + +IL    I  +   K+L+  E+N +R  +++ L  E DLRR +  +++RLV+I  YRGIRH +GLP RGQ+T TNARTRKG +  I  KKK
Sbjct:    3 RISGIDLPREKRVEIGLTYIYGIGLSTSQKILAVTGINPDTRVKDLSEEEVNEIRTYINKNLMVEGDLRRDVALNIKRLVEIGSYRGIRHRRGLPVRGQKTKTNARTRKGPKKTIANKKK 122          
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_THERP2.434e-2146.6730S ribosomal protein S13 OS=Thermomicrobium roseu... [more]
RS13_STAS12.434e-2145.3830S ribosomal protein S13 OS=Staphylococcus saprop... [more]
RS13_SHEDO2.434e-2146.4930S ribosomal protein S13 OS=Shewanella denitrific... [more]
RS13_RHORT2.434e-2145.0030S ribosomal protein S13 OS=Rhodospirillum rubrum... [more]
RS13_RHOP52.434e-2145.0030S ribosomal protein S13 OS=Rhodopseudomonas palu... [more]
RS13_MESSB2.434e-2144.1730S ribosomal protein S13 OS=Mesorhizobium sp. (st... [more]
RS13_LACF32.434e-2142.8630S ribosomal protein S13 OS=Lactobacillus ferment... [more]
RS13_LACAC2.434e-2145.0530S ribosomal protein S13 OS=Lactobacillus acidoph... [more]
RS13_CLOPH2.434e-2143.3330S ribosomal protein S13 OS=Clostridium phytoferm... [more]
RS13_CLOB82.434e-2145.0030S ribosomal protein S13 OS=Clostridium beijerinc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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