CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AGRT5 (30S ribosomal protein S13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsM PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP  KR+  +L +++GIG   A +I+  + I   K   +LT  E+  +RE + R Y    DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGIPAEKRVHQLTDAEVLQIREAIDRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_UREU1 (30S ribosomal protein S13 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = -2
Query:   94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT---------KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456
            R+   +IPNDKR+  SL +++GIG+S + +IL   NI   +           E+  V LN ++    +     DLRR +  D++RL++I  YRGIRH +GLP RGQRT TNARTRKG R  +  KK  TR
Sbjct:    3 RILGVDIPNDKRVVISLTYIFGIGKSTSQKILKLANIDENIRVNDLADEQIAEIRRVALNFVKANGEKLQLEGDLRRTVAMDIKRLMEIGSYRGIRHRRGLPVRGQRTKTNARTRKGPRKTVANKKIETR 132          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SYNP6 (30S ribosomal protein S13 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = -2
Query:   94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456
            R+   ++P DKR E  L ++YGIG +RA +IL    +  +   K+L   E+ +LR+ V   Y    DLRR     ++RL+DI   RG RH  GLP RGQRT TNARTR+G R  + GKKK TR
Sbjct:    3 RIAGVDLPRDKRAEIGLTYIYGIGPTRAKEILAKTGVSPDTRIKDLNDSEVAALRQVVENDYQVEGDLRRLEAMSIKRLMDIGTVRGRRHRAGLPVRGQRTRTNARTRRGARKTVAGKKKATR 125          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SYNE7 (30S ribosomal protein S13 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = -2
Query:   94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456
            R+   ++P DKR E  L ++YGIG +RA +IL    +  +   K+L   E+ +LR+ V   Y    DLRR     ++RL+DI   RG RH  GLP RGQRT TNARTR+G R  + GKKK TR
Sbjct:    3 RIAGVDLPRDKRAEIGLTYIYGIGPTRAKEILAKTGVSPDTRIKDLNDSEVAALRQVVENDYQVEGDLRRLEAMSIKRLMDIGTVRGRRHRAGLPVRGQRTRTNARTRRGARKTVAGKKKATR 125          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STRMK (30S ribosomal protein S13 OS=Stenotrophomonas maltophilia (strain K279a) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    +P  K +   LQ +YGIGR+R+ ++ C++      TK  +L+  E+  LR EV +Y+   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKKV-CEVAGVASTTKIRDLSEPEIERLRAEVGKYIVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STRM5 (30S ribosomal protein S13 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    +P  K +   LQ +YGIGR+R+ ++ C++      TK  +L+  E+  LR EV +Y+   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKKV-CEVAGVASTTKIRDLSEPEIERLRAEVGKYIVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHISS (30S ribosomal protein S13 OS=Shigella sonnei (strain Ss046) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIFL (30S ribosomal protein S13 OS=Shigella flexneri GN=rpsM PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIF8 (30S ribosomal protein S13 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIDS (30S ribosomal protein S13 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_AGRT52.434e-2145.8330S ribosomal protein S13 OS=Agrobacterium tumefac... [more]
RS13_UREU13.179e-2143.0830S ribosomal protein S13 OS=Ureaplasma urealyticu... [more]
RS13_SYNP63.179e-2145.5330S ribosomal protein S13 OS=Synechococcus sp. (st... [more]
RS13_SYNE73.179e-2145.5330S ribosomal protein S13 OS=Synechococcus elongat... [more]
RS13_STRMK3.179e-2146.9630S ribosomal protein S13 OS=Stenotrophomonas malt... [more]
RS13_STRM53.179e-2146.9630S ribosomal protein S13 OS=Stenotrophomonas malt... [more]
RS13_SHISS3.179e-2143.8630S ribosomal protein S13 OS=Shigella sonnei (stra... [more]
RS13_SHIFL3.179e-2143.8630S ribosomal protein S13 OS=Shigella flexneri GN=... [more]
RS13_SHIF83.179e-2143.8630S ribosomal protein S13 OS=Shigella flexneri ser... [more]
RS13_SHIDS3.179e-2143.8630S ribosomal protein S13 OS=Shigella dysenteriae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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