CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AGRT5 (30S ribosomal protein S13 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsM PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 2.434e-21 Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP KR+ +L +++GIG A +I+ + I K +LT E+ +RE + R Y DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG AI GKKK Sbjct: 3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGIPAEKRVHQLTDAEVLQIREAIDRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_UREU1 (30S ribosomal protein S13 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT---------KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456 R+ +IPNDKR+ SL +++GIG+S + +IL NI + E+ V LN ++ + DLRR + D++RL++I YRGIRH +GLP RGQRT TNARTRKG R + KK TR Sbjct: 3 RILGVDIPNDKRVVISLTYIFGIGKSTSQKILKLANIDENIRVNDLADEQIAEIRRVALNFVKANGEKLQLEGDLRRTVAMDIKRLMEIGSYRGIRHRRGLPVRGQRTKTNARTRKGPRKTVANKKIETR 132
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SYNP6 (30S ribosomal protein S13 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456 R+ ++P DKR E L ++YGIG +RA +IL + + K+L E+ +LR+ V Y DLRR ++RL+DI RG RH GLP RGQRT TNARTR+G R + GKKK TR Sbjct: 3 RIAGVDLPRDKRAEIGLTYIYGIGPTRAKEILAKTGVSPDTRIKDLNDSEVAALRQVVENDYQVEGDLRRLEAMSIKRLMDIGTVRGRRHRAGLPVRGQRTRTNARTRRGARKTVAGKKKATR 125
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SYNE7 (30S ribosomal protein S13 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 56/123 (45.53%), Postives = 74/123 (60.16%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456 R+ ++P DKR E L ++YGIG +RA +IL + + K+L E+ +LR+ V Y DLRR ++RL+DI RG RH GLP RGQRT TNARTR+G R + GKKK TR Sbjct: 3 RIAGVDLPRDKRAEIGLTYIYGIGPTRAKEILAKTGVSPDTRIKDLNDSEVAALRQVVENDYQVEGDLRRLEAMSIKRLMDIGTVRGRRHRAGLPVRGQRTRTNARTRRGARKTVAGKKKATR 125
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STRMK (30S ribosomal protein S13 OS=Stenotrophomonas maltophilia (strain K279a) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ +P K + LQ +YGIGR+R+ ++ C++ TK +L+ E+ LR EV +Y+ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI Sbjct: 3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKKV-CEVAGVASTTKIRDLSEPEIERLRAEVGKYIVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_STRM5 (30S ribosomal protein S13 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ +P K + LQ +YGIGR+R+ ++ C++ TK +L+ E+ LR EV +Y+ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI Sbjct: 3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKKV-CEVAGVASTTKIRDLSEPEIERLRAEVGKYIVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHISS (30S ribosomal protein S13 OS=Shigella sonnei (strain Ss046) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIFL (30S ribosomal protein S13 OS=Shigella flexneri GN=rpsM PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIF8 (30S ribosomal protein S13 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIDS (30S ribosomal protein S13 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |