CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIBS (30S ribosomal protein S13 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHESH (30S ribosomal protein S13 OS=Shewanella sediminis (strain HAW-EB3) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L ++GIGR+RA I +I KEL+ ++++LRE V+ Y DLRR + +++RL+D+ CYRGIRH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTGIFGIGRTRARAICATTSIAEDAKIKELSEAQIDTLREAVAEYTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHIL3 (30S ribosomal protein S13 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP KR+ +L +++GIG A +I+ + I + +LT E+ +RE + R Y DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG AI GKKK Sbjct: 3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIVAKVGIPAERRVHQLTDAEVLQIREAIDRDYQVEGDLRRDTAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_KOSOT (30S ribosomal protein S13 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 52/119 (43.70%), Postives = 82/119 (68.91%), Query Frame = -2 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456 R+ E+PN+K+ +L ++YGIG +RA +IL + NI G+K K+LT E++ + + ++ Y +LR+ ++ +++RL++I CYRGIRH GLP RGQ+T +NARTRKG R + KK Sbjct: 3 RIVGVELPNNKKTFVALTYIYGIGPARAKEILKNTNIDGDKRVKDLTDEEISRISKYITDHYKVEGELRQEVERNIKRLIEIGCYRGIRHKIGLPVRGQKTHSNARTRKGPRASRIKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_HALHL (30S ribosomal protein S13 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = -2 Query: 127 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 456 R+ IP K +L +YGIGR+RA I + + + ++L E+ +LR+EV Y+ DLRR + D++RL+D+ CYRG+RH +GLP RGQ+T TNARTRKG R Sbjct: 3 RIAGINIPTHKHAWVALTSIYGIGRTRALSICNAAGVPHDRRVRDLNDAEVEALRQEVGNYVIEGDLRRSVAMDIKRLMDLGCYRGMRHRRGLPVRGQQTQTNARTRKGPR 113
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_HAEDU (30S ribosomal protein S13 OS=Haemophilus ducreyi GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YGIG++RA I I + +EL+ ++ LREEVS++ DLRR + ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTAIYGIGKTRAKAICVATGIAEDVKIRELSEEQIEKLREEVSKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_GEMAT (30S ribosomal protein S13 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 54/123 (43.90%), Postives = 80/123 (65.04%), Query Frame = -2 Query: 94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGED-LRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456 R+ ++P +K++E L +++GIGR A +IL + + + ++L +LN LR+E+ R E LR + +++RL+DI YRG RH +GLP RGQRT TNART+KG R AI GKKK T+ Sbjct: 3 RIAGVDLPREKKVEIGLTYIFGIGRKTAQKILEASGVSSAQRVRDLNDNDLNKLRQEIERNHRVEGALRTEVAMNIKRLMDIGSYRGTRHRRGLPVRGQRTHTNARTKKGPRRAIAGKKKVTK 125
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ECOUT (30S ribosomal protein S13 OS=Escherichia coli (strain UTI89 / UPEC) GN=rpsM PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ECOLI (30S ribosomal protein S13 OS=Escherichia coli (strain K12) GN=rpsM PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ECOL6 (30S ribosomal protein S13 OS=Escherichia coli O6 GN=rpsM PE=3 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21 Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YG+G++R+ IL I + EL+ ++++LR+EV++++ DLRR I ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |