CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHIBS (30S ribosomal protein S13 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHESH (30S ribosomal protein S13 OS=Shewanella sediminis (strain HAW-EB3) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  ++GIGR+RA  I    +I      KEL+  ++++LRE V+ Y    DLRR +  +++RL+D+ CYRGIRH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTGIFGIGRTRARAICATTSIAEDAKIKELSEAQIDTLREAVAEYTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHIL3 (30S ribosomal protein S13 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP  KR+  +L +++GIG   A +I+  + I   +   +LT  E+  +RE + R Y    DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIVAKVGIPAERRVHQLTDAEVLQIREAIDRDYQVEGDLRRDTAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_KOSOT (30S ribosomal protein S13 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/119 (43.70%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 456
            R+   E+PN+K+   +L ++YGIG +RA +IL + NI G+K  K+LT  E++ + + ++  Y    +LR+ ++ +++RL++I CYRGIRH  GLP RGQ+T +NARTRKG R +   KK
Sbjct:    3 RIVGVELPNNKKTFVALTYIYGIGPARAKEILKNTNIDGDKRVKDLTDEEISRISKYITDHYKVEGELRQEVERNIKRLIEIGCYRGIRHKIGLPVRGQKTHSNARTRKGPRASRIKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_HALHL (30S ribosomal protein S13 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  127 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 456
            R+    IP  K    +L  +YGIGR+RA  I     + + +  ++L   E+ +LR+EV  Y+   DLRR +  D++RL+D+ CYRG+RH +GLP RGQ+T TNARTRKG R
Sbjct:    3 RIAGINIPTHKHAWVALTSIYGIGRTRALSICNAAGVPHDRRVRDLNDAEVEALRQEVGNYVIEGDLRRSVAMDIKRLMDLGCYRGMRHRRGLPVRGQQTQTNARTRKGPR 113          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_HAEDU (30S ribosomal protein S13 OS=Haemophilus ducreyi GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/114 (45.61%), Postives = 72/114 (63.16%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YGIG++RA  I     I   +  +EL+  ++  LREEVS++    DLRR +   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTAIYGIGKTRAKAICVATGIAEDVKIRELSEEQIEKLREEVSKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_GEMAT (30S ribosomal protein S13 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 54/123 (43.90%), Postives = 80/123 (65.04%), Query Frame = -2
Query:   94 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGED-LRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 456
            R+   ++P +K++E  L +++GIGR  A +IL    + + +  ++L   +LN LR+E+ R    E  LR  +  +++RL+DI  YRG RH +GLP RGQRT TNART+KG R AI GKKK T+
Sbjct:    3 RIAGVDLPREKKVEIGLTYIFGIGRKTAQKILEASGVSSAQRVRDLNDNDLNKLRQEIERNHRVEGALRTEVAMNIKRLMDIGSYRGTRHRRGLPVRGQRTHTNARTKKGPRRAIAGKKKVTK 125          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ECOUT (30S ribosomal protein S13 OS=Escherichia coli (strain UTI89 / UPEC) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ECOLI (30S ribosomal protein S13 OS=Escherichia coli (strain K12) GN=rpsM PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_ECOL6 (30S ribosomal protein S13 OS=Escherichia coli O6 GN=rpsM PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YG+G++R+  IL    I   +   EL+  ++++LR+EV++++   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116          
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_SHIBS3.179e-2143.8630S ribosomal protein S13 OS=Shigella boydii serot... [more]
RS13_SHESH3.179e-2145.6130S ribosomal protein S13 OS=Shewanella sediminis ... [more]
RS13_RHIL33.179e-2145.0030S ribosomal protein S13 OS=Rhizobium leguminosar... [more]
RS13_KOSOT3.179e-2143.7030S ribosomal protein S13 OS=Kosmotoga olearia (st... [more]
RS13_HALHL3.179e-2145.0530S ribosomal protein S13 OS=Halorhodospira haloph... [more]
RS13_HAEDU3.179e-2145.6130S ribosomal protein S13 OS=Haemophilus ducreyi G... [more]
RS13_GEMAT3.179e-2143.9030S ribosomal protein S13 OS=Gemmatimonas aurantia... [more]
RS13_ECOUT3.179e-2143.8630S ribosomal protein S13 OS=Escherichia coli (str... [more]
RS13_ECOLI3.179e-2143.8630S ribosomal protein S13 OS=Escherichia coli (str... [more]
RS13_ECOL63.179e-2143.8630S ribosomal protein S13 OS=Escherichia coli O6 G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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