CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BRUMB (30S ribosomal protein S13 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -2 
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG   A +I+  + I + +   +L+  E+  +RE +   Y    DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVNIALQYIHGIGPKFAREIVTKVGIADDRRVNQLSDAEVLQIREAIDADYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKAIAGKKK 122
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BRUC2 (30S ribosomal protein S13 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -2 
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG   A +I+  + I + +   +L+  E+  +RE +   Y    DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVNIALQYIHGIGPKFAREIVTKVGIADDRRVNQLSDAEVLQIREAIDADYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKAIAGKKK 122
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BRUAB (30S ribosomal protein S13 OS=Brucella abortus GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -2 
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG   A +I+  + I + +   +L+  E+  +RE +   Y    DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVNIALQYIHGIGPKFAREIVTKVGIADDRRVNQLSDAEVLQIREAIDADYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKAIAGKKK 122
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BRUA2 (30S ribosomal protein S13 OS=Brucella abortus (strain 2308) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -2 
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG   A +I+  + I + +   +L+  E+  +RE +   Y    DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVNIALQYIHGIGPKFAREIVTKVGIADDRRVNQLSDAEVLQIREAIDADYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKAIAGKKK 122
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BRUA1 (30S ribosomal protein S13 OS=Brucella abortus (strain S19) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = -2 
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG   A +I+  + I + +   +L+  E+  +RE +   Y    DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVNIALQYIHGIGPKFAREIVTKVGIADDRRVNQLSDAEVLQIREAIDADYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKAIAGKKK 122
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BORPD (30S ribosomal protein S13 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.179e-21
Identity = 54/119 (45.38%), Postives = 73/119 (61.34%), Query Frame = -2 
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP  +  E  L  ++GIGR+RA +I    N+  +K  K+LT  EL  +RE V  +    DLRR ++  ++RL+D+  YRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAANVPLSKKVKDLTDAELERIREHVGVFTVEGDLRREVQLSIKRLIDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLKK 121
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_XANOR (30S ribosomal protein S13 OS=Xanthomonas oryzae pv. oryzae GN=rpsM PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = -2 
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    +P  K +   LQ +YGIGR+R+ + LC+       TK  +L+  E+  LR EV +Y+   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKK-LCESAGVTSTTKIRDLSEPEIERLRAEVGKYVVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_XANOP (30S ribosomal protein S13 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = -2 
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    +P  K +   LQ +YGIGR+R+ + LC+       TK  +L+  E+  LR EV +Y+   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKK-LCESAGVTSTTKIRDLSEPEIERLRAEVGKYVVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_XANOM (30S ribosomal protein S13 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = -2 
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    +P  K +   LQ +YGIGR+R+ + LC+       TK  +L+  E+  LR EV +Y+   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKK-LCESAGVTSTTKIRDLSEPEIERLRAEVGKYVVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116
[Close]
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_XANCB (30S ribosomal protein S13 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpsM PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = -2 
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLTK--ELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    +P  K +   LQ +YGIGR+R+ + LC+       TK  +L+  E+  LR EV +Y+   DLRR I   ++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R AI
Sbjct:    3 RIAGVNLPAQKHVWVGLQSIYGIGRTRSKK-LCESAGVTSTTKIRDLSEPEIERLRAEVGKYVVEGDLRREIGIAIKRLMDLGCYRGLRHRRGLPLRGQRTRTNARTRKGPRKAI 116
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BRUMB3.179e-2143.3330S ribosomal protein S13 OS=Brucella melitensis b... [more]
RS13_BRUC23.179e-2143.3330S ribosomal protein S13 OS=Brucella canis (strai... [more]
RS13_BRUAB3.179e-2143.3330S ribosomal protein S13 OS=Brucella abortus GN=r... [more]
RS13_BRUA23.179e-2143.3330S ribosomal protein S13 OS=Brucella abortus (str... [more]
RS13_BRUA13.179e-2143.3330S ribosomal protein S13 OS=Brucella abortus (str... [more]
RS13_BORPD3.179e-2145.3830S ribosomal protein S13 OS=Bordetella petrii (st... [more]
RS13_XANOR4.152e-2147.8330S ribosomal protein S13 OS=Xanthomonas oryzae pv... [more]
RS13_XANOP4.152e-2147.8330S ribosomal protein S13 OS=Xanthomonas oryzae pv... [more]
RS13_XANOM4.152e-2147.8330S ribosomal protein S13 OS=Xanthomonas oryzae pv... [more]
RS13_XANCB4.152e-2147.8330S ribosomal protein S13 OS=Xanthomonas campestri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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