CX672493

Overview
NameCX672493
Unique NameCX672493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CLOP1 (30S ribosomal protein S13 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   ++P +KR+E  L ++YGIG   + +IL    +  +   K+LT  E+NS+R  +       DLRR +  +++RLV+I  YRGIRH +GLP RGQ+T TNARTRKG +  I  KKK
Sbjct:    3 RIAGIDLPREKRVEIGLTYIYGIGLPTSQKILEVTGVNPDTRVKDLTEEEVNSIRNYIKDLTVEGDLRREVALNIKRLVEIGSYRGIRHRKGLPLRGQKTKTNARTRKGPKKTIANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CHLFF (30S ribosomal protein S13 OS=Chlamydophila felis (strain Fe/C-56) GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNK-----LTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP  K+L+ SL ++YGIG + + +I+  L +  +     LT+E  G  LNSL +  S Y+   DLRR +++D++RL+ I  YRG RH   LP RGQRT TN+RTRKGKR  + GKKK
Sbjct:    3 RIIGIDIPAKKKLKISLTYIYGIGPALSEEIIAKLQLNPEARAVELTEEEIG-RLNSLLQ--SEYVVEGDLRRRVQSDIKRLISIHAYRGQRHRLSLPVRGQRTKTNSRTRKGKRKTVAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CHLCV (30S ribosomal protein S13 OS=Chlamydophila caviae GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNK-----LTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP  K+L+ SL ++YGIG + + +I+  L +  +     LT+E  G  LNSL +  S Y+   DLRR +++D++RL+ I  YRG RH   LP RGQRT TN+RTRKGKR  + GKKK
Sbjct:    3 RIIGIDIPAKKKLKISLTYIYGIGPALSEEIIAKLQLNPEARAVELTEEEIG-RLNSLLQ--SEYVVEGDLRRRVQSDIKRLISIHAYRGQRHRLSLPVRGQRTKTNSRTRKGKRKTVAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BRASO (30S ribosomal protein S13 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP +KR+  +LQ+++GIG   A +I+  + I  ++   +L+  E+  +RE + R Y+   DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTNKRVLIALQYIHGIGPKIAGEIIEKVKIAEDRRVNQLSDQEVLQIREIIDRDYVVEGDLRRETGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACWK (30S ribosomal protein S13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+   +IP DKR+  SL +V+GIGR+ A +I+ +  I ++   ++L+  EL  +R+ + R     DLRR +  +++RL++I  YRG+RH +GLP RGQ +  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKIITEAGISSETRVRDLSEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AGRVS (30S ribosomal protein S13 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP  KR+  +L +++GIG   A +I+  + +  ++   +LT  E+ ++RE + R Y    DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMEKVGLSADRRVHQLTDAEVLAIRETIDRDYQVEGDLRRDTAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SPHAL (30S ribosomal protein S13 OS=Sphingopyxis alaskensis GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    +P +KR+  +L +++GIGR  A  I   L I + +  ++L+  E+  +RE +    T E DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKGK   I GKKK
Sbjct:    3 RIAGVNLPTNKRVIIALTYIHGIGRKTAVDIADKLGIDHGRRVQDLSDAEVLQIRETIDADHTVEGDLRRNTAMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGKAKPIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEVI (30S ribosomal protein S13 OS=Shewanella violacea GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  ++GIGR+RA  I    +I      KEL+  +++ LRE V+ Y    DLRR +  +++RL+D+ CYRGIRH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHTVIALTGIFGIGRTRARAICAATSIAEDAKIKELSEAQIDILREAVAEYTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHILW (30S ribosomal protein S13 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456
            R+    IP  KR+  +L +++GIG   A +I+  + I   +   +LT  E+  +RE + R Y    DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG   AI GKKK
Sbjct:    3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIVEKVGIPAERRVHQLTDAEVLQIREAIDRDYQVEGDLRRDTAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122          
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_PHOPR (30S ribosomal protein S13 OS=Photobacterium profundum GN=rpsM PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456
            R+    IP+ K    +L  +YGIG++R+  +L +  I   +   EL+  +++ LRE V++Y    DLRR +  +++RL+D+ CYRGIRH + LP RGQRT TNARTRKG R  I
Sbjct:    3 RIAGINIPDQKHSVIALTAIYGIGKTRSKAVLAEAGIAESVKISELSEEQIDLLREGVAKYTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRKPI 116          
The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_CLOP17.082e-2143.7030S ribosomal protein S13 OS=Clostridium perfringe... [more]
RS13_CHLFF7.082e-2145.5330S ribosomal protein S13 OS=Chlamydophila felis (... [more]
RS13_CHLCV7.082e-2145.5330S ribosomal protein S13 OS=Chlamydophila caviae ... [more]
RS13_BRASO7.082e-2145.0030S ribosomal protein S13 OS=Bradyrhizobium sp. (s... [more]
RS13_BACWK7.082e-2142.0230S ribosomal protein S13 OS=Bacillus weihenstepha... [more]
RS13_AGRVS7.082e-2144.1730S ribosomal protein S13 OS=Agrobacterium vitis (... [more]
RS13_SPHAL9.250e-2145.0030S ribosomal protein S13 OS=Sphingopyxis alaskens... [more]
RS13_SHEVI9.250e-2145.6130S ribosomal protein S13 OS=Shewanella violacea G... [more]
RS13_RHILW9.250e-2145.0030S ribosomal protein S13 OS=Rhizobium leguminosar... [more]
RS13_PHOPR9.250e-2143.8630S ribosomal protein S13 OS=Photobacterium profun... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_17C10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-17C10-E19-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bp
TGAAAACTAGTTGAATTTGTCCTAAAACTTATTTGTATCAAAAAAATAAT
TCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGAGTG
GGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCTAGC
ATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTCTAA
TACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTAATG
CATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACGAAG
AGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAATGT
TTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAAACA
TGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTTTCC
CACACGAAGGCCTTGTACGCGTAGACCATGAAACGAAATGGTCTGAATAA
GCTGCCGACTGACATTGGATAACATCCCAACGGAATTGCGTAAACTAATC
ATCTTTATGTCGATCCGGTCCTTGCGCCTCGGCTCTGAGTCTGAGATGAA
TCGGCAGTCGCAGCTGTGA
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