CX672493
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CLOP1 (30S ribosomal protein S13 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsM PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21 Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ ++P +KR+E L ++YGIG + +IL + + K+LT E+NS+R + DLRR + +++RLV+I YRGIRH +GLP RGQ+T TNARTRKG + I KKK Sbjct: 3 RIAGIDLPREKRVEIGLTYIYGIGLPTSQKILEVTGVNPDTRVKDLTEEEVNSIRNYIKDLTVEGDLRREVALNIKRLVEIGSYRGIRHRKGLPLRGQKTKTNARTRKGPKKTIANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CHLFF (30S ribosomal protein S13 OS=Chlamydophila felis (strain Fe/C-56) GN=rpsM PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21 Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNK-----LTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP K+L+ SL ++YGIG + + +I+ L + + LT+E G LNSL + S Y+ DLRR +++D++RL+ I YRG RH LP RGQRT TN+RTRKGKR + GKKK Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSEEIIAKLQLNPEARAVELTEEEIG-RLNSLLQ--SEYVVEGDLRRRVQSDIKRLISIHAYRGQRHRLSLPVRGQRTKTNSRTRKGKRKTVAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_CHLCV (30S ribosomal protein S13 OS=Chlamydophila caviae GN=rpsM PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21 Identity = 56/123 (45.53%), Postives = 79/123 (64.23%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNK-----LTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP K+L+ SL ++YGIG + + +I+ L + + LT+E G LNSL + S Y+ DLRR +++D++RL+ I YRG RH LP RGQRT TN+RTRKGKR + GKKK Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSEEIIAKLQLNPEARAVELTEEEIG-RLNSLLQ--SEYVVEGDLRRRVQSDIKRLISIHAYRGQRHRLSLPVRGQRTKTNSRTRKGKRKTVAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BRASO (30S ribosomal protein S13 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsM PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP +KR+ +LQ+++GIG A +I+ + I ++ +L+ E+ +RE + R Y+ DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG AI GKKK Sbjct: 3 RIAGVNIPTNKRVLIALQYIHGIGPKIAGEIIEKVKIAEDRRVNQLSDQEVLQIREIIDRDYVVEGDLRRETGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_BACWK (30S ribosomal protein S13 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpsM PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21 Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +IP DKR+ SL +V+GIGR+ A +I+ + I ++ ++L+ EL +R+ + R DLRR + +++RL++I YRG+RH +GLP RGQ + NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYVFGIGRTTAEKIITEAGISSETRVRDLSEDELGRIRDIIDRIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_AGRVS (30S ribosomal protein S13 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsM PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21 Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP KR+ +L +++GIG A +I+ + + ++ +LT E+ ++RE + R Y DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG AI GKKK Sbjct: 3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMEKVGLSADRRVHQLTDAEVLAIRETIDRDYQVEGDLRRDTAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SPHAL (30S ribosomal protein S13 OS=Sphingopyxis alaskensis GN=rpsM PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21 Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ +P +KR+ +L +++GIGR A I L I + + ++L+ E+ +RE + T E DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKGK I GKKK Sbjct: 3 RIAGVNLPTNKRVIIALTYIHGIGRKTAVDIADKLGIDHGRRVQDLSDAEVLQIRETIDADHTVEGDLRRNTAMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGKAKPIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_SHEVI (30S ribosomal protein S13 OS=Shewanella violacea GN=rpsM PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21 Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L ++GIGR+RA I +I KEL+ +++ LRE V+ Y DLRR + +++RL+D+ CYRGIRH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHTVIALTGIFGIGRTRARAICAATSIAEDAKIKELSEAQIDILREAVAEYTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRKPI 116
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_RHILW (30S ribosomal protein S13 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsM PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21 Identity = 54/120 (45.00%), Postives = 75/120 (62.50%), Query Frame = -2 Query: 103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 456 R+ IP KR+ +L +++GIG A +I+ + I + +LT E+ +RE + R Y DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG AI GKKK Sbjct: 3 RIAGVNIPTAKRVVIALTYIHGIGPKFAQEIVEKVGIPAERRVHQLTDAEVLQIREAIDRDYQVEGDLRRDTAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKKK 122
BLAST of CX672493 vs. ExPASy Swiss-Prot
Match: RS13_PHOPR (30S ribosomal protein S13 OS=Photobacterium profundum GN=rpsM PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21 Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = -2 Query: 118 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKLT-KELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 456 R+ IP+ K +L +YGIG++R+ +L + I + EL+ +++ LRE V++Y DLRR + +++RL+D+ CYRGIRH + LP RGQRT TNARTRKG R I Sbjct: 3 RIAGINIPDQKHSVIALTAIYGIGKTRSKAVLAEAGIAESVKISELSEEQIDLLREGVAKYTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRKPI 116 The following BLAST results are available for this feature:
BLAST of CX672493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672493 ID=CX672493; Name=CX672493; organism=Citrus sinensis; type=EST; length=619bpback to top |