EY664827

Overview
NameEY664827
Unique NameEY664827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664827_ssr26 microsatellite EY664827_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7969 contig Csv1_Contig7969:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD61_ARATH (Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.123e-19
Identity = 64/205 (31.22%), Postives = 104/205 (50.73%), Query Frame = 3
Query:  258 SDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTH----LHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKECYLLI 860
            S   L+  R + +  + +    F   +LT  LAVNY DRF+ S    + KPW+ +L++++C+SL+AK+ +  +  + DL V+     F+A+ I+RME ++L  L+WRM  VTP SF    +    LK      L      +   L  S+  D  F+ + PS +A A +L    E+ P       N +     +++D+L ECY  I
Sbjct:   50 SSAFLLSNRNQAISSITQYSRKFDDPSLT-YLAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRKPDMS-VSDLPVEGE--FFDAQMIERMENVILGALKWRMRSVTPFSFLAFFISLFELKEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFELCPLQFPCFSNRINQCTYVNKDELMECYKAI 250          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD53_ORYSJ (Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.123e-19
Identity = 62/196 (31.63%), Postives = 102/196 (52.04%), Query Frame = 3
Query:  189 DDNELLSLICKEK--------KENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATML 752
            DD  L  ++ KE+        +      + + +E +  AR   V W+++  A F F+  TA +AV Y DRF+      +DK W  QL++VACLSLAAKV+E + P L + ++     +++  ++ RMELLVL+TL+W+M   TP S+ +    +   +       + R    + + I     + Y PST+A A +L
Sbjct:   61 DDEYLALMLSKERCAGGGGGGERGDEEEEEMVEEWMKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLD----MYDCASLMRMELLVLTTLKWQMITETPFSYLNCFTAK--FRHDERKAIVLRAIECIFASIKVISSVGYQPSTIALAAIL 250          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD71_ORYSJ (Putative cyclin-D7-1 OS=Oryza sativa subsp. japonica GN=CYCD7-1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.583e-17
Identity = 66/200 (33.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:  270 LILARKEVVEWVLRVKA---HFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPK-YVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEH--QNLLMGVLNISQDKLKECY 851
            L+L +++      R+KA     G  A TA  A NY DRF+  +   K + WM ++V+V CLSLA K+DE  +P L DLQ+++   + F A TI+ MEL +L  L+WR+  VTP SF          +             LLL  + D  F+ +  S LA + +  T+    P +P  H   N L+   + +  ++KEC+
Sbjct:   78 LLLQQQQHGVAAARLKAAMGRLGLEAATAFNAANYLDRFLSINCHLKWEEWMVEVVSVGCLSLACKLDEVTIPSLHDLQMEEAMGHSFRASTIRDMELTLLKALRWRLACVTPFSFLPVTTTTTTTRA------------LLLRSLLDPSFLRFDASLLAASAL--TLSSTTPQHP-NHLLLNRLIHPFSQTDHEVKECF 262          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCD61_ORYSJ (Cyclin-D6-1 OS=Oryza sativa subsp. japonica GN=CYCD6-1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.993e-14
Identity = 55/196 (28.06%), Postives = 96/196 (48.98%), Query Frame = 3
Query:  279 ARKEVVEWVLRVK--AHFGFTALTAILAVNYFDRFILSHSFQKDK-PWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTH---LHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEHQNLLMGVLNISQDKLKEC 848
            AR+E   ++ +V+           A LA+NY DR++       ++ PW  +L+A++CL+LAAK+         D+Q +  +++F+   IQRME +VL+ L+WR   VTP++F    +     +     L      R   LLL V  + +   + PS  A A +L    EV   + +  +  +     ++ +KL+EC
Sbjct:   55 ARREAAGFISKVRYDGELDVHPRVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQ-RGEEFMFDEAKIQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHPALLDAIKARAVDLLLRVQPEVKMAEFSPSVAAAAALLAAAGEVAGAHLLGFEAGVAACPFVNSEKLREC 249          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCND2_BOVIN (G1/S-specific cyclin-D2 OS=Bos taurus GN=CCND2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 66/249 (26.51%), Postives = 106/249 (42.57%), Query Frame = 3
Query:  132 CEEKESPLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDP----ISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEH------QNLLMGVLNISQDKLKEC 848
            C E E P+   + + +L  DD  L +L+  E  E ++P       +  +I    R+ V  W+L V            LA+NY DRF+      K      QL+   C+ LA+K+ ET +PL  +          + + +   EL+VL  L+W +  VTP  F +HI+R+L   +          +  +     D +F  Y PS +AT ++   I  ++    V         +LL  + N   D LK C
Sbjct:    5 CGEVE-PVRRAVPDANLLHDDRVLQNLLTIE--ERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAINYLDRFLAGVPTPKTHL---QLLGAVCMFLASKLKET-IPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPSEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEDVSSLTGDALVDLLAKITNTDVDCLKAC 246          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCND2_HUMAN (G1/S-specific cyclin-D2 OS=Homo sapiens GN=CCND2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 66/249 (26.51%), Postives = 104/249 (41.77%), Query Frame = 3
Query:  132 CEEKESPLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDP----ISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM------LHTIXEVEPCNPVEHQNLLMGVLNISQDKLKEC 848
            C E + P+   +++ +L  DD  L +L+  E  E ++P       +  +I    R+ V  W+L V            LA+NY DRF+      K      QL+   C+ LA+K+ ET  PL  +          + + +   EL+VL  L+W +  VTP  F +HI+R+L  +           +  +     D +F  Y PS +AT ++      L    EV          LL  + N   D LK C
Sbjct:    5 CHEVD-PVRRAVRDRNLLRDDRVLQNLLTIE--ERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHL---QLLGAVCMFLASKLKETS-PLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKAC 246          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCND2_PIG (G1/S-specific cyclin-D2 OS=Sus scrofa GN=CCND2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 63/243 (25.93%), Postives = 102/243 (41.98%), Query Frame = 3
Query:  150 PLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDP----ISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIXEVEPCNPVEH------QNLLMGVLNISQDKLKEC 848
            P+   + + +L  DD  L +L+  E  E ++P       +  +I    R+ V  W+L V            LA+NY DRF+      K      QL+   C+ LA+K+ ET +PL  +          + + +   EL+VL  L+W +  VTP  F +HI+R+L              +  +     D +F  Y PS +AT ++   I  ++    V         +LL  + N   D LK C
Sbjct:   10 PVRRAVPDANLLHDDRVLQNLLTIE--ERYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAINYLDRFLAGVPTPKTHL---QLLGAVCMFLASKLKET-IPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEDVSSLTGDALVDLLARITNTDVDCLKAC 246          
BLAST of EY664827 vs. ExPASy Swiss-Prot
Match: CCND2_CHICK (G1/S-specific cyclin-D2 OS=Gallus gallus GN=CCND2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 56/204 (27.45%), Postives = 91/204 (44.61%), Query Frame = 3
Query:  150 PLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDP----ISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 749
            P+   L + +L +DD  L +L+  E  E ++P       +  +I    R+ V  W+L V            LA+NY DRF+     +K      QL+   C+ LA+K+ ET +PL  +          + + +   EL+VL  L+W +  VTP  F +HI+R+L L            +  +     D  F  Y PS +AT ++
Sbjct:   10 PMRRALPDPNLLYDDRVLHNLLTIE--ERYLPQCSYFKCVQKDIQPFMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAVVPTRKCHL---QLLGAVCMFLASKLKET-IPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPLPKDKLVLIRKHAQTFIALCATDFNFAMYPPSMIATGSV 207          
The following BLAST results are available for this feature:
BLAST of EY664827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CCD61_ARATH4.123e-1931.22Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CY... [more]
CCD53_ORYSJ4.123e-1931.63Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD71_ORYSJ6.583e-1733.00Putative cyclin-D7-1 OS=Oryza sativa subsp. japoni... [more]
CCD61_ORYSJ3.993e-1428.06Cyclin-D6-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCND2_BOVIN1.855e-1126.51G1/S-specific cyclin-D2 OS=Bos taurus GN=CCND2 PE=... [more]
CCND2_HUMAN3.164e-1126.51G1/S-specific cyclin-D2 OS=Homo sapiens GN=CCND2 P... [more]
CCND2_PIG5.397e-1125.93G1/S-specific cyclin-D2 OS=Sus scrofa GN=CCND2 PE=... [more]
CCND2_CHICK9.206e-1127.45G1/S-specific cyclin-D2 OS=Gallus gallus GN=CCND2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664827 ID=EY664827; Name=EY664827; organism=Citrus sinensis; type=EST; length=870bp
CTTTGCCTCATNATAATACTGATGCCCACCACCACCAGCTTGAAACCACT
CCACTGGCTCTTGACGGCCTTTTTTGCGATGAAGAAAGTTTCGAGTTTGA
GGAGTGTTGTATTGATGCTGAGACTGAGAGATGTGAGGAAAAGGAGTCGC
CTTTACCACCTGTTTTGCAAGAACATGACTTGTTTTGGGATGATAACGAG
TTGTTGTCTTTGATCTGTAAAGAAAAAAAAGAAAACTTTGTGCCTAGTGA
TCCAATCTCAGATGAGATTTTAATTCTGGCTCGTAAAGAGGTTGTTGAGT
GGGTGCTTAGGGTTAAGGCTCATTTTGGTTTCACTGCTTTGACCGCTATT
CTTGCTGTTAACTACTTTGATAGGTTCATTTTAAGCCATTCGTTTCAAAA
AGACAAGCCCTGGATGGGTCAGCTTGTTGCTGTAGCTTGCTTGTCTCTGG
CTGCTAAAGTGGATGAGACCCAAGTGCCCCTTCTTTTGGACTTGCAAGTG
AAGGACCCGAAATATGTTTTTGAGGCAAAGACTATTCAGAGAATGGAGCT
TCTGGTGCTCTCTACACTTCAATGGAGGATGAATCCTGTGACTCCTATTT
CATTCTTTGATCACATTGTGAGAAGGCTTGGGTTGAAGACCCACTTGCAC
TGGGAATTTCTCTATAGGTGTGAGCATTTGCTTCTCTCTGTCATTGCTGA
TTCACGGTTTATGTGCTATCTTCCTTCTACATTGGCTACTGCAACAATGC
TTCATACAATTCANGAGGTTGAGCCATGCAATCCTGTGGAACACCAAAAT
CTGCTTATGGGTGTGCTTAACATCAGTCAGGATAAGCTTAAGGAGTGCTA
CTTGCTCATCCTANAGTATC
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