EY664821

Overview
NameEY664821
Unique NameEY664821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664821 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.384e-32
Identity = 74/185 (40.00%), Postives = 101/185 (54.59%), Query Frame = 1
Query:    1 ELVFEFLGNRTGHPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQA-LTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECL 540
            E+ FEFLGN  G  + +QTNIY NG     RE+R NLWFDP  D+H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   +++  AP+ + + D  + GC V       S      +     + +T  +  +    R  HM Y YC D  RY V   EC+
Sbjct:  108 EIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291          
BLAST of EY664821 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29
Identity = 71/181 (39.23%), Postives = 100/181 (55.25%), Query Frame = 1
Query:    1 ELVFEFLGNRTGHPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 537
            EL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:   97 ELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
The following BLAST results are available for this feature:
BLAST of EY664821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH28_ARATH1.384e-3240.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH2.442e-2939.23Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664821 ID=EY664821; Name=EY664821; organism=Citrus sinensis; type=EST; length=840bp
GAGCTTGTTTTTGAGTTCCTGGGAAACCGAACGGGTCATCCTTACACGGT
CCAGACCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGA
ACCTCTGGTTTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGG
AACCATCACCATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTA
CAAAAACAGTGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGT
ATTCGACGCTGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAG
AAAATAGATTGGAGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTTGA
TATTGAGGGCTGCCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCCAG
GTAACTGGTGGGAGGCAAATAATTATCAAGCCCTCACCGCCATGGAAGCA
AGAAGATACAGATGGGTTCGTCTCAACCACATGATCTATGATTATTGCAC
TGATAAATCAAGATACCCAGTACCCCCACCGGAATGCCTTGCCGGCATAT
AAATTCAACCCGCCAATTAATTAAGCAGTTGGACGGTACTCCATATCCGT
ATCATATCATGTATATTACTTCACGTACACGTCCTTTGTATTATTCCCTA
TTCGTGTGAAAAGACTTATACGCATATCAATGGATGGGCANGANGGGAAA
TAAACATTGNGTGCTTTAAATGTGATTATGGGAGTGGGAAATATGTGGTA
TTCTGCTNCGCTTGTACATATATAAGTCTGAATTTGATGCCAGTATTCTG
TGCCAATAAAGCCCTCTCATATTGGGAAAAAAAAAAAAAA
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