CX672441

Overview
NameCX672441
Unique NameCX672441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  491 SSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELADSLPRP 706
            S K   YRGVR R WGK+ +EIR+P  ++RIWLGTF T E AA A+D AA+ +KG  A+ NF  L    P P
Sbjct:   99 SVKPKKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF--LTPPTPTP 168          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  470 IKRMRDQSSKHPVYRGVRMRNWGKWVSEIREP-RKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 679
            ++R+   ++    YRGVR R WGK+ +EIR+  R  +R+WLGTF T E AARA+D AA  ++G  AILNFP
Sbjct:    1 MERIESYNTNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: DRE1H_ORYSJ (Dehydration-responsive element-binding protein 1H OS=Oryza sativa subsp. japonica GN=DREB1H PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  476 RMRDQSSKHPVYRGVRMRNW-GKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIK-----GNSAILNFPELADSLPRPNSLAPRDV 730
            R + + ++HPVYRGVR R   G+WV E+R P K+ +R+WLGT+ T E AARAHD A ++++     G +A LNF + A  L  P + AP D+
Sbjct:   36 RTKFRETRHPVYRGVRRRGGAGRWVCEVRVPGKRGARLWLGTYVTAEAAARAHDAAMIALRGGAGGGGAACLNFQDSAWLLAVPPA-APSDL 126          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: DRE1H_ORYSI (Dehydration-responsive element-binding protein 1H OS=Oryza sativa subsp. indica GN=DREB1H PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  476 RMRDQSSKHPVYRGVRMRNW-GKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIK-----GNSAILNFPELADSLPRPNSLAPRDV 730
            R + + ++HPVYRGVR R   G+WV E+R P K+ +R+WLGT+ T E AARAHD A ++++     G +A LNF + A  L  P + AP D+
Sbjct:   36 RTKFRETRHPVYRGVRRRGGAGRWVCEVRVPGKRGARLWLGTYVTAEAAARAHDAAMIALRGGAGGGGAACLNFQDSAWLLAVPPA-APSDL 126          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.625e-12
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  509 YRGVRMRNWGKWVSEIREP-RKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 679
            YRGVR R WGK+ +EIR+P RK +R+WLGTF T   AA+A+D AA  ++G+ AI+NFP
Sbjct:  138 YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  509 YRGVRMRNWGKWVSEIREPRKKS-RIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 679
            YRGVR R WGK+ +EIR+  +K  R+WLGTF T E AA A+D AA ++KG+ A+LNFP
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  491 SSKHPVYRGVRMRNWGKWVSEIREPRKK-SRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFP 679
            ++K   YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct:  142 AAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: DRE1A_ORYSJ (Dehydration-responsive element-binding protein 1A OS=Oryza sativa subsp. japonica GN=DREB1A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  476 RMRDQSSKHPVYRGVRMR-NWGKWVSEIREP-RKKSRIWLGTFPTPEMAARAHDVAALSIK------GNSAILNFPELADSLPRPNS 712
            R + + ++HPV+RGVR R N G+WV E+R P R+  R+WLGTF T E AARAHD A L+I       G +  LNF + A  L  P S
Sbjct:   40 RTKFRETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARAHDAAMLAINAGGGGGGGACCLNFADSAWLLAVPRS 126          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: DRE1A_ORYSI (Dehydration-responsive element-binding protein 1A OS=Oryza sativa subsp. indica GN=DREB1A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  476 RMRDQSSKHPVYRGVRMR-NWGKWVSEIREP-RKKSRIWLGTFPTPEMAARAHDVAALSIK------GNSAILNFPELADSLPRPNS 712
            R + + ++HPV+RGVR R N G+WV E+R P R+  R+WLGTF T E AARAHD A L+I       G +  LNF + A  L  P S
Sbjct:   40 RTKFRETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARAHDAAMLAINAGGGGGGGACCLNFADSAWLLAVPRS 126          
BLAST of CX672441 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.428e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 2
Query:  509 YRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNF 676
            +RGVR R WGKW +EIR+P ++ RIWLGTF T E AA  +D AA+ ++G  A+ NF
Sbjct:  125 FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
The following BLAST results are available for this feature:
BLAST of CX672441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CRF6_ARATH1.539e-1252.78Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF95_ARATH2.010e-1250.70Ethylene-responsive transcription factor ERF095 OS... [more]
DRE1H_ORYSJ2.010e-1245.65Dehydration-responsive element-binding protein 1H ... [more]
DRE1H_ORYSI2.010e-1245.65Dehydration-responsive element-binding protein 1H ... [more]
ERF5_NICSY2.625e-1258.62Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF94_ARATH3.428e-1258.62Ethylene-responsive transcription factor ERF094 OS... [more]
EF100_ARATH3.428e-1254.69Ethylene-responsive transcription factor 1A OS=Ara... [more]
DRE1A_ORYSJ3.428e-1248.28Dehydration-responsive element-binding protein 1A ... [more]
DRE1A_ORYSI3.428e-1248.28Dehydration-responsive element-binding protein 1A ... [more]
CRF3_ARATH3.428e-1255.36Ethylene-responsive transcription factor CRF3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16H12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16H12-P24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672441 ID=CX672441; Name=CX672441; organism=Citrus sinensis; type=EST; length=820bp
CGACTCTGCTTTGCTATCTCCATTGAATAGTATTTATGTACGCATATCAA
TTCGTCATCAATCCTTTTGACGAAACACAAAAAACAGGTACTTGCTTTCA
TTGGCCATCTCTTTCCTCTAATTTGTTTCTAAACAACAAATTACAAGCCC
CTTCTCCCTCTCAGTTAACCTCCCTCCGAAACTTGACCTCCTCAGCTCTC
CCATTTATTCTTTGCTCTATTTTGCTTTCAAACAAAAATTTCCACTTCGC
CCCAAACTTTCTTCCTTGTCTTCATTTTAGTCCCTTTATTTTTTTTTAAT
GAACTGAATCCAAATAATAATCACCATCTTGTTAATAATCAGTTTCGTCA
AGAGTAGCGACATCAACAACGACTACAAGATGAGTGAACCGCAAAACTCA
TCGGAAGCAGAAAGCAGCTCGTCAAACTCATCATTGTCGCCAACAAATGC
TCATCAAGACTCCAAAAAGATCAAAAGAATGAGAGATCAATCAAGCAAGC
ACCCCGTTTATCGGGGCGTCCGGATGAGGAACTGGGGCAAATGGGTCTCC
GAAATCCGTGAGCCCCGCAAAAAATCCCGTATCTGGCTCGGCACTTTCCC
CACGCCCGAAATGGCCGCACGTGCGCATGACGTGGCTGCCTTGAGCATCA
AGGGCAACTCAGCAATCCTCAACTTCCCAGAACTCGCTGACTCGCTCCCA
CGTCCTAACTCTCTCGCCCCACGTGACGTCCAAGCCGCCGCTGCTAAGGC
TGCTCAAATGGACAAGTTTGACTCCTCGTCTTCATCTTCTCTGTCATCTT
TGGTTTCTGCTATGGATTTG
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