CX672438

Overview
NameCX672438
Unique NameCX672438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_VIBVU (Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27
Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = -1
Query:    1 SFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 324
            S +A   T ++GAPV +N +S+T G  G +LL+D HL++KL  F RERIPERVVHARG  A G F V+ D S+LT +      G  TPV VRFSTVIH +GSPETLRD
Sbjct:   18 SVHAQTLTRDNGAPVGDNQNSITAGENGSVLLQDVHLIQKLQRFARERIPERVVHARGTGAHGEFVVSGDFSDLTLSSPFAQSGKVTPVFVRFSTVIHSKGSPETLRD 125          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA2_CAEEL (Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.073e-26
Identity = 54/101 (53.47%), Postives = 77/101 (76.24%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT++GAP+++  + +T G RGP+L++D   ++++A+FDRERIPERVVHA+GA A G+FEVTHD++    AD     G QTP++VRFSTV  E GS +T+RD
Sbjct:   24 TTSNGAPIYSKTAVLTAGRRGPMLMQDVVYMDEMAHFDRERIPERVVHAKGAGAHGYFEVTHDITKYCKADMFNKVGKQTPLLVRFSTVAGESGSADTVRD 124          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_DANRE (Catalase OS=Danio rerio GN=cat PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.401e-26
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT +G P+ +  ++MT GPRGP+L++D    +++A+FDRERIPERVVHA+GA A G+FEVTHD++  + A      G  TP++VRFSTV  E GSP+T+RD
Sbjct:   28 TTGAGVPIGDKLNAMTAGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHVGKTTPIVVRFSTVAGEAGSPDTVRD 128          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_VIBVY (Catalase OS=Vibrio vulnificus (strain YJ016) GN=VVA0294 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = -1
Query:    1 SFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 324
            S +A   T ++GAPV +N +S+T G  G +LL+D HL++KL  F RERIPERVVHARG  A G F  + D S+LT +      G  TPV VRFSTVIH +GSPETLRD
Sbjct:   18 SVHAQTLTRDNGAPVGDNQNSITAGENGSVLLQDVHLIQKLQRFARERIPERVVHARGTGAHGEFVASGDFSDLTLSSPFAQSGKVTPVFVRFSTVIHSKGSPETLRD 125          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_VIBPA (Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = -1
Query:    1 ASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 330
            ++S  A   T ++GAPV +N +S+T G  G +LL+D HL++KL  F RERIPERVVHARG  A G F  + D S+LT +      G  TPV VRFSTVIH +GSPETLRD
Sbjct:   16 STSLQAQTLTRDNGAPVGDNQNSITAGENGSVLLQDVHLIQKLQRFARERIPERVVHARGTGAHGEFVASGDFSDLTVSAPFTEKGKVTPVFVRFSTVIHSKGSPETLRD 125          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_VIBCH (Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = -1
Query:    1 ASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 330
            A S  A   T ++GAPV +N +S+T G  G +LL+D HL++KL  F RERIPERVVHARG  A G F  + D S+LT +    + G  TPV VRFSTVIH +GSPETLRD
Sbjct:   16 AVSVQAQTLTRDNGAPVGDNQNSITAGEHGSVLLQDVHLIQKLQRFARERIPERVVHARGTGAHGEFVASGDFSDLTLSAPFTSKGKITPVFVRFSTVIHSKGSPETLRD 125          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_DICDI (Catalase-A OS=Dictyostelium discoideum GN=catA PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = -1
Query:    1 NAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEV-THDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 318
            +AP  TT+SG+P+ NN +SMT G  GPIL++D+ L++KLA+FDRERIPERVVHA+GA A G+FEV + DV     A FL   G +TP+  RFSTV  E+GS ++ RD
Sbjct:    2 SAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRERIPERVVHAKGAGAHGYFEVPSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSERD 108          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_STRCO (Catalase OS=Streptomyces coelicolor GN=katA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.391e-26
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT SGAPV +N +S + G  GP+L++D HL+EKLA F+RERIPERVVHARG+ A G FEVT DVS  T ADFL   G +T V +RFSTV    G  + +RD
Sbjct:    7 TTESGAPVADNQNSASAGIGGPLLIQDQHLIEKLARFNRERIPERVVHARGSGAYGHFEVTDDVSGFTHADFLNTVGKRTEVFLRFSTVADSLGGADAVRD 107          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA1_CAEEL (Peroxisomal catalase 1 OS=Caenorhabditis elegans GN=ctl-2 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.391e-26
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT++GAP+++  + +T G RGP+L++D   ++++A+FDRERIPERVVHA+GA A G+FEVTHD+S    AD     G QTP+++RFSTV  E GS +T RD
Sbjct:   24 TTSNGAPIYSKTAVLTAGRRGPMLMQDVVYMDEMAHFDRERIPERVVHAKGAGAHGYFEVTHDISKYCKADIFNKVGKQTPLLIRFSTVGGESGSADTARD 124          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_LACSK (Catalase OS=Lactobacillus sakei GN=katA PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.122e-26
Identity = 58/101 (57.43%), Postives = 72/101 (71.29%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TTN G P  +N  S T G RGP+L++DY L+EKLA+F+RERIPERVVHA+GA AKG+F+VT D+S  T A      G +TP+I RFS V  E G P+T RD
Sbjct:    6 TTNEGQPWADNQHSQTAGQRGPVLIQDYQLLEKLAHFNRERIPERVVHAKGAGAKGYFKVTKDMSAYTKAAVFSGVGKKTPLITRFSQVAGEAGYPDTYRD 106          
The following BLAST results are available for this feature:
BLAST of CX672438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CATA_VIBVU6.291e-2756.48Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=... [more]
CATA2_CAEEL1.073e-2653.47Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2... [more]
CATA_DANRE1.401e-2653.47Catalase OS=Danio rerio GN=cat PE=2 SV=1[more]
CATA_VIBVY1.830e-2655.56Catalase OS=Vibrio vulnificus (strain YJ016) GN=VV... [more]
CATA_VIBPA1.830e-2654.55Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=... [more]
CATA_VIBCH1.830e-2655.45Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2[more]
CATA_DICDI1.830e-2656.07Catalase-A OS=Dictyostelium discoideum GN=catA PE=... [more]
CATA_STRCO2.391e-2658.42Catalase OS=Streptomyces coelicolor GN=katA PE=3 S... [more]
CATA1_CAEEL2.391e-2653.47Peroxisomal catalase 1 OS=Caenorhabditis elegans G... [more]
CATA_LACSK3.122e-2657.43Catalase OS=Lactobacillus sakei GN=katA PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16H09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16H09-P18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672438 ID=CX672438; Name=CX672438; organism=Citrus sinensis; type=EST; length=432bp
ATCTCTCAGGGTTTCAGGGCTGCCACGCTCATGGATAACAGTGGAGAAGC
GGACAATGACAGGCGTCTGAACCCCTGGGGCTCGAAGGAAATCAGCACAA
GTAAGGTTAGAAACATCATGGGTGACCTCAAAGAAACCCTTAGCACTGGC
TCCCCTGGCATGGACAACACGTTCTGGAATCCGCTCCCTATCAAAATTTG
CAAGTTTCTCCACTAGATGATAATCCTCAAGGAGGATTGGACCTCTAGGT
CCAATCGTCATTGATGAGTTGTTGTTCCATACCGGAGCGCCGGAATTGGT
GGTAAAGAAGGGGGCGTTGAAAGAACTGGCAGGGCGGAACTTGTATGGAT
CCATAGCGGGAGGGAAGCAGAAAAAAAGATTGAACGAGAAGCTACACTAC
GAGAAAGAAAAAGAGAGAGTAGACAAATGCCT
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