CX672438

Overview
NameCX672438
Unique NameCX672438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length432
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_DEIRA (Catalase OS=Deinococcus radiodurans GN=katA PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.690e-25
Identity = 62/121 (51.24%), Postives = 72/121 (59.50%), Query Frame = -1
Query:    1 PYKFRPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVT-----HDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 348
            P   R A        TT  G PV +N +S T+G RGP+ LE+Y  +EKL++FDRERIPERVVHARG  A G F  T       VS  T A   +  G +TPV VRFSTV H   SPETLRD
Sbjct:   19 PRDGRTAPGEQGTTLTTRQGHPVHDNQNSRTVGSRGPMTLENYQFIEKLSHFDRERIPERVVHARGVGAHGVFRATGKVGDEPVSKYTRAKLFQEDGKETPVFVRFSTVGHGTHSPETLRD 139          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_CALJA (Catalase OS=Callithrix jacchus GN=CAT PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 7.690e-25
Identity = 58/122 (47.54%), Postives = 80/122 (65.57%), Query Frame = -1
Query:    1 PAMDPYKF--RPASSFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 360
            PA D  K      ++  A   TT +G PV +  + +T GPRGP+L++D    +++A+FDRERIPERVVHA+GA A G+FEVTHD++  + A      G +TP+ VRFSTV  E GS +T+RD
Sbjct:    7 PASDQMKHWKEQRAAQKADVLTTGAGNPVGDKLNVITAGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRD 128          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATE_PSEAE (Catalase HPII OS=Pseudomonas aeruginosa GN=katE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.004e-24
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            +TN+G  + +N +++  G RGP LLED+ + EK+ +FD ERIPERVVHARG++A G+FE   D+S+LT A FL   G +TPV VRFSTV   RGS +T+RD
Sbjct:   43 STNTGTRIADNQNTLKAGERGPSLLEDFIMREKITHFDHERIPERVVHARGSAAHGYFEAYEDLSDLTKAGFLAEAGKRTPVFVRFSTVQGPRGSADTVRD 143          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_RANRU (Catalase OS=Rana rugosa GN=cat PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.004e-24
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT  G PV +  + +T+GPRGP+L++D    +++A+FDRERIPERVVHA+GA A G+FEVTHD++  + A      G +TP+ VRFSTV  E GS +T+RD
Sbjct:   28 TTGGGNPVSDKLNLLTVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEFIGKRTPIAVRFSTVAGEAGSADTVRD 128          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_RAT (Catalase OS=Rattus norvegicus GN=Cat PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.312e-24
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT  G P+ +  + MT GPRGP+L++D    +++A+FDRERIPERVVHA+GA A G+FEVTHD++  + A      G +TP+ VRFSTV  E GS +T+RD
Sbjct:   28 TTGGGNPIGDKLNIMTAGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRD 128          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_CANFA (Catalase OS=Canis familiaris GN=CAT PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.312e-24
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT  G P+ +  + MT GPRGP+L++D    +++A+FDRERIPERVVHA+GA A G+FEVTHD++  + A      G +TP+ VRFSTV  E GS +T+RD
Sbjct:   28 TTGGGNPIGDKLNVMTAGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIGKRTPIAVRFSTVAGESGSADTVRD 128          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_SCHPO (Catalase OS=Schizosaccharomyces pombe GN=cta1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.237e-24
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = -1
Query:    1 SFNAPFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 324
            S   P +TTN+G P++N  ++  +G  GP+LL+D HL++   +FDRERIPERVVHA+G+ A G FE T D++  T        G +TP++ RFSTV  ERG+P+T RD
Sbjct:    6 SNTVPVYTTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARD 113          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_RHIME (Catalase A OS=Rhizobium meliloti GN=katA PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 56/104 (53.85%), Postives = 76/104 (73.08%), Query Frame = -1
Query:    1 PFFTTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 312
            P  TT +GAPV +N +S+T GPRG I+L+DY L+EKLA+ +RERIPERVVHA+G  A G  ++T D+S  T A  L+ PG +TP++ RFSTV  E+G+ +  RD
Sbjct:    5 PTITTTAGAPVPDNQNSLTAGPRGGIMLQDYQLIEKLAHQNRERIPERVVHAKGWGAFGSLKITGDISQYTRAKCLQ-PGAETPMLARFSTVAGEQGAADHERD 107          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_HELPY (Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TT  GAPVW++N+ +T GPRGP+LL+    +EKLA FDRERIPERVVHA+G+ A G F VT D++  T A      G +T    RFSTV  ERGS + +RD
Sbjct:    9 TTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKVGKKTECFFRFSTVAGERGSADAVRD 109          
BLAST of CX672438 vs. ExPASy Swiss-Prot
Match: CATA_DESVM (Catalase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=katA PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = -1
Query:    1 TTNSGAPVWNNNSSMTIGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDVSNLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRD 303
            TTN+GAPV +N ++MT GPRGP+LL+D   +EKLA+FDRE IPER +HA+G+ A G F VTHD+++ T A      G +T + VRFSTV  ERG+ +  RD
Sbjct:    7 TTNAGAPVPDNQNAMTAGPRGPMLLQDVWFLEKLAHFDREVIPERRMHAKGSGAYGTFTVTHDITSYTKAALFSKIGKKTDLFVRFSTVAGERGAADAERD 107          
The following BLAST results are available for this feature:
BLAST of CX672438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
CATA_DEIRA7.690e-2551.24Catalase OS=Deinococcus radiodurans GN=katA PE=1 S... [more]
CATA_CALJA7.690e-2547.54Catalase OS=Callithrix jacchus GN=CAT PE=2 SV=3[more]
CATE_PSEAE1.004e-2454.46Catalase HPII OS=Pseudomonas aeruginosa GN=katE PE... [more]
CATA_RANRU1.004e-2452.48Catalase OS=Rana rugosa GN=cat PE=2 SV=3[more]
CATA_RAT1.312e-2452.48Catalase OS=Rattus norvegicus GN=Cat PE=1 SV=3[more]
CATA_CANFA1.312e-2452.48Catalase OS=Canis familiaris GN=CAT PE=1 SV=3[more]
CATA_SCHPO2.237e-2448.15Catalase OS=Schizosaccharomyces pombe GN=cta1 PE=1... [more]
CATA_RHIME3.817e-2453.85Catalase A OS=Rhizobium meliloti GN=katA PE=3 SV=2[more]
CATA_HELPY3.817e-2454.46Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2[more]
CATA_DESVM3.817e-2454.46Catalase OS=Desulfovibrio vulgaris (strain Miyazak... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16H09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16H09-P18-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672438 ID=CX672438; Name=CX672438; organism=Citrus sinensis; type=EST; length=432bp
ATCTCTCAGGGTTTCAGGGCTGCCACGCTCATGGATAACAGTGGAGAAGC
GGACAATGACAGGCGTCTGAACCCCTGGGGCTCGAAGGAAATCAGCACAA
GTAAGGTTAGAAACATCATGGGTGACCTCAAAGAAACCCTTAGCACTGGC
TCCCCTGGCATGGACAACACGTTCTGGAATCCGCTCCCTATCAAAATTTG
CAAGTTTCTCCACTAGATGATAATCCTCAAGGAGGATTGGACCTCTAGGT
CCAATCGTCATTGATGAGTTGTTGTTCCATACCGGAGCGCCGGAATTGGT
GGTAAAGAAGGGGGCGTTGAAAGAACTGGCAGGGCGGAACTTGTATGGAT
CCATAGCGGGAGGGAAGCAGAAAAAAAGATTGAACGAGAAGCTACACTAC
GAGAAAGAAAAAGAGAGAGTAGACAAATGCCT
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