EH117788

Overview
NameEH117788
Unique NameEH117788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length211
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2178 contig Csv1_Contig2178:412..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK06_MOUSE (Mitogen-activated protein kinase 6 OS=Mus musculus GN=Mapk6 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            +   VYI  E M+TDL  ++     L EEH + F+YQLLRGLKYIHSANV+HRDLKP+NL
Sbjct:  100 ELNSVYIVQEYMETDLANVLEQGPLL-EEHARLFMYQLLRGLKYIHSANVLHRDLKPANL 158          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK06_HUMAN (Mitogen-activated protein kinase 6 OS=Homo sapiens GN=MAPK6 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            +   VYI  E M+TDL  ++     L EEH + F+YQLLRGLKYIHSANV+HRDLKP+NL
Sbjct:  100 ELNSVYIVQEYMETDLANVLEQGPLL-EEHARLFMYQLLRGLKYIHSANVLHRDLKPANL 158          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_SETTU (Mitogen-activated protein kinase HOG1 OS=Setosphaeria turcica GN=HOG1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y   EL+ TDL++++ S + L ++  QYFLYQ+LRGLKYIHSA V+HRDLKPSN+
Sbjct:   65 DIYFVTELLGTDLHRLLTS-RPLEKQFIQYFLYQILRGLKYIHSAGVVHRDLKPSNI 120          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_HORWE (Mitogen-activated protein kinase HOG1 OS=Hortaea werneckii GN=HOG1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.188e-14
Identity = 33/57 (57.89%), Postives = 47/57 (82.46%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y+  EL+ TDL++++ S + L ++  QYFLYQ+LRGLKY+HSA V+HRDLKPSN+
Sbjct:   92 DMYVVTELLGTDLHRLLTS-RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNI 147          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: SLT2_YEAST (Mitogen-activated protein kinase SLT2/MPK1 OS=Saccharomyces cerevisiae GN=SLT2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.388e-14
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = -1
Query:   23 VYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 190
            +Y+  ELM+ D++QII+S Q L++ H Q F YQ+L GLKYIHSA+V+HRDLKP NL
Sbjct:  104 LYLYEELMECDMHQIIKSGQPLTDAHYQSFTYQILCGLKYIHSADVLHRDLKPGNL 159          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: NLK_CAEBR (Serine/threonine kinase NLK OS=Caenorhabditis briggsae GN=lit-1 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.388e-14
Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = -1
Query:   23 TDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 196
            T  Y+  ELM +DL++II S Q+L+ +H + F+YQ+LRGLKY+H+AN++HRD+KP NL
Sbjct:  340 TITYVLTELMQSDLHKIIVSPQTLTIDHVKVFVYQILRGLKYLHTANILHRDIKPGNL 397          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_USTMA (Mitogen-activated protein kinase HOG1 OS=Ustilago maydis GN=HOG1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.388e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y   EL+ TDL++++ S + L ++  QYFLYQ+LRGLKY+HSA V+HRDLKPSN+
Sbjct:   92 DIYFVTELLGTDLHRLLTS-RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNI 147          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_SCHPO (Mitogen-activated protein kinase sty1 OS=Schizosaccharomyces pombe GN=sty1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.388e-14
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = -1
Query:   23 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 199
            F D+Y   EL+ TDL++++ S + L  +  QYFLYQ+LRGLK++HSA VIHRDLKPSN+
Sbjct:   90 FEDIYFVTELLGTDLHRLLTS-RPLETQFIQYFLYQILRGLKFVHSAGVIHRDLKPSNI 147          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_PHANO (Mitogen-activated protein kinase HOG1 OS=Phaeosphaeria nodorum GN=HOG1 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.388e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y   EL+ TDL++++ S + L ++  QYFLYQ+LRGLKY+HSA V+HRDLKPSN+
Sbjct:   92 DIYFVTELLGTDLHRLLTS-RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNI 147          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_NEOFI (Mitogen-activated protein kinase hog1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hog1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.388e-14
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y   EL+ TDL++++ S + L ++  QYFLYQ+LRGLKY+HSA V+HRDLKPSN+
Sbjct:   92 DIYFVTELLGTDLHRLLTS-RPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNI 147          
The following BLAST results are available for this feature:
BLAST of EH117788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MK06_MOUSE7.188e-1460.00Mitogen-activated protein kinase 6 OS=Mus musculus... [more]
MK06_HUMAN7.188e-1460.00Mitogen-activated protein kinase 6 OS=Homo sapiens... [more]
HOG1_SETTU7.188e-1459.65Mitogen-activated protein kinase HOG1 OS=Setosphae... [more]
HOG1_HORWE7.188e-1457.89Mitogen-activated protein kinase HOG1 OS=Hortaea w... [more]
SLT2_YEAST9.388e-1460.71Mitogen-activated protein kinase SLT2/MPK1 OS=Sacc... [more]
NLK_CAEBR9.388e-1455.17Serine/threonine kinase NLK OS=Caenorhabditis brig... [more]
HOG1_USTMA9.388e-1457.89Mitogen-activated protein kinase HOG1 OS=Ustilago ... [more]
HOG1_SCHPO9.388e-1457.63Mitogen-activated protein kinase sty1 OS=Schizosac... [more]
HOG1_PHANO9.388e-1457.89Mitogen-activated protein kinase HOG1 OS=Phaeospha... [more]
HOG1_NEOFI9.388e-1457.89Mitogen-activated protein kinase hog1 OS=Neosartor... [more]

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Properties
Property NameValue
Genbank descriptionfjfw17 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117788 ID=EH117788; Name=EH117788; organism=Citrus sinensis; type=EST; length=211bp
GACGATGAGTCCTGAGTAACGAGAGATTGCTGGGCTTCAAATCCCGATGA
ATAACATTTGCTGAATGGATATACTTGAGTCCTCGAAGAAGTTGATACAA
GAAATACTGGCAGTGCTCCTCGGATAAACTTTGATTTGAGCGAATAATTT
GGTAAAGGTCAGTGTCCATGAGTTCCGCAGCAATATAGACATCAGTGAAT
TGGTACGCAGT
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