EH117788

Overview
NameEH117788
Unique NameEH117788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length211
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2178 contig Csv1_Contig2178:412..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK13_RAT (Mitogen-activated protein kinase 13 OS=Rattus norvegicus GN=Mapk13 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F D Y+    M TDL +I+      SEE  QY +YQ+L+GLKYIHSA ++HRDLKP NL++
Sbjct:  100 FQDFYLVMPFMQTDLQKIM--GMEFSEEKVQYLVYQMLKGLKYIHSAGIVHRDLKPGNLAV 158          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK13_HUMAN (Mitogen-activated protein kinase 13 OS=Homo sapiens GN=MAPK13 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F D Y+    M TDL +I+      SEE  QY +YQ+L+GLKYIHSA V+HRDLKP NL++
Sbjct:  100 FYDFYLVMPFMQTDLQKIM--GMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAV 158          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK09_CHICK (Mitogen-activated protein kinase 9 OS=Gallus gallus GN=MAPK9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            +F DVY+  ELMD +L Q+I  +  L  E   Y LYQ+L G+K++HSA +IHRDLKPSN+
Sbjct:  100 EFQDVYLVMELMDANLCQVI--HMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNI 157          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: JNK1_ANCCA (Stress-activated protein kinase JNK-1 OS=Ancylostoma caninum GN=JNK-1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            +F D+YI  ELMD +L Q+I+ +  L  E   Y LYQ+L G+K++HSA +IHRDLKPSN+
Sbjct:  100 EFNDLYIVMELMDANLCQVIQMD--LDHERLSYLLYQMLCGIKHLHSAGIIHRDLKPSNI 157          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_WALSE (Mitogen-activated protein kinase HOG1 (Fragment) OS=Wallemia sebi GN=HOG1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y   EL+ TDL++++ S++ L  +  QYFLYQ+LR LK++H A V+HRDLKPSN+
Sbjct:   27 DIYFITELLGTDLHRLL-SSRPLERQFVQYFLYQMLRALKFVHPAGVVHRDLKPSNI 82          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_WALMU (Mitogen-activated protein kinase HOG1 (Fragment) OS=Wallemia muriae GN=HOG1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y   EL+ TDL++++ S++ L  +  QYFLYQ+LR LK++H A V+HRDLKPSN+
Sbjct:   27 DIYFITELLGTDLHRLL-SSRPLERQFVQYFLYQMLRALKFVHPAGVVHRDLKPSNI 82          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: HOG1_WALIC (Mitogen-activated protein kinase HOG1 (Fragment) OS=Wallemia ichthyophaga GN=HOG1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = -1
Query:   23 DVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 193
            D+Y   EL+ TDL++++ S++ L  +  QYFLYQ+LR LK++H A V+HRDLKPSN+
Sbjct:   26 DIYFITELLGTDLHRLL-SSRPLERQFVQYFLYQMLRALKFVHPAGVVHRDLKPSNI 81          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK13_PANTR (Mitogen-activated protein kinase 13 OS=Pan troglodytes GN=MAPK13 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.728e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = -1
Query:   17 FTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNLSL 199
            F D Y+    M TDL +I+      SEE  QY +YQ+L+GLKYIHSA V+HRDLKP NL++
Sbjct:  100 FHDFYLVMXFMQTDLQKIMX--MEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAV 158          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK08_XENLA (Mitogen-activated protein kinase 8 OS=Xenopus laevis GN=mapk8 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.728e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = -1
Query:   23 QFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 202
            +F D+YI  ELMD +L Q+I+    L  E   Y LYQ+L G+K++HSA +IHRDLKPSN+
Sbjct:  100 EFQDLYIVMELMDANLCQVIQ--MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNI 157          
BLAST of EH117788 vs. ExPASy Swiss-Prot
Match: MK08_DANRE (Mitogen-activated protein kinase 8 OS=Danio rerio GN=mapk8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.728e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = -1
Query:   23 TAYQFTDVYIAAELMDTDLYQIIRSNQSLSEEHCQYFLYQLLRGLKYIHSANVIHRDLKPSNL 211
            T  +F DVY+  ELMD +L Q+I+    L  E   Y LYQ+L G+K++H+A +IHRDLKPSN+
Sbjct:   97 TLEEFQDVYLVMELMDANLCQVIQ--MELDHERLSYLLYQMLCGIKHLHAAGIIHRDLKPSNI 157          
The following BLAST results are available for this feature:
BLAST of EH117788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
MK13_RAT5.151e-1252.46Mitogen-activated protein kinase 13 OS=Rattus norv... [more]
MK13_HUMAN5.151e-1254.10Mitogen-activated protein kinase 13 OS=Homo sapien... [more]
MK09_CHICK5.151e-1253.33Mitogen-activated protein kinase 9 OS=Gallus gallu... [more]
JNK1_ANCCA5.151e-1253.33Stress-activated protein kinase JNK-1 OS=Ancylosto... [more]
HOG1_WALSE5.151e-1252.63Mitogen-activated protein kinase HOG1 (Fragment) O... [more]
HOG1_WALMU5.151e-1252.63Mitogen-activated protein kinase HOG1 (Fragment) O... [more]
HOG1_WALIC5.151e-1252.63Mitogen-activated protein kinase HOG1 (Fragment) O... [more]
MK13_PANTR6.728e-1254.10Mitogen-activated protein kinase 13 OS=Pan troglod... [more]
MK08_XENLA6.728e-1253.33Mitogen-activated protein kinase 8 OS=Xenopus laev... [more]
MK08_DANRE6.728e-1250.79Mitogen-activated protein kinase 8 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionfjfw17 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117788 ID=EH117788; Name=EH117788; organism=Citrus sinensis; type=EST; length=211bp
GACGATGAGTCCTGAGTAACGAGAGATTGCTGGGCTTCAAATCCCGATGA
ATAACATTTGCTGAATGGATATACTTGAGTCCTCGAAGAAGTTGATACAA
GAAATACTGGCAGTGCTCCTCGGATAAACTTTGATTTGAGCGAATAATTT
GGTAAAGGTCAGTGTCCATGAGTTCCGCAGCAATATAGACATCAGTGAAT
TGGTACGCAGT
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