EH117779

Overview
NameEH117779
Unique NameEH117779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length275
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:297..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EH117779 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.571e-11
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   13 IHKKLAPTIGVSVDHRRKNRSLEGLQSNVQRPKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPE 237
            + +++A TIG+ VDHRR+NRS E LQ NV+R K Y A L+VFPR+A + K GD+     A  T V    +PI  E
Sbjct:   85 VSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPITQE 158
The following BLAST results are available for this feature:
BLAST of EH117779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL13_SCHPO2.571e-1148.0060S ribosomal protein L13 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionfjfw5 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117779 ID=EH117779; Name=EH117779; organism=Citrus sinensis; type=EST; length=275bp
GACTGCGTACCAATTCACAAGAAACTGGCTCCGACAATTGGTGTTTCAGT
CGATCATCGACGCAAGAACCGTTCTCTTGAGGGTCTTCAATCTAATGTTC
AGAGGCCCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAGACGTGCT
CGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAACAGCAAC
TCAAGTACAAGGACCTTACATGCCCATTGCTCCTGAGAAGCCTACTGTCG
AGCTGGTTACTCAGGGACTCATCGT
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