EH117777

Overview
NameEH117777
Unique NameEH117777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1684 contig Csv1_Contig1684:1282..1606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH117777 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.574e-35
Identity = 72/89 (80.90%), Postives = 74/89 (83.15%), Query Frame = -1
Query:   52 QFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPR 318
            +FRPERFLEEESKVEANGNDFRYLPFGVGRRSCP             GRLVQNFELLPPPGQ K+DT EKGGQFSLHILKHSTIVAKPR
Sbjct:  415 EFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQDKVDTTEKGGQFSLHILKHSTIVAKPR 503          
BLAST of EH117777 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.489e-35
Identity = 72/90 (80.00%), Postives = 75/90 (83.33%), Query Frame = -1
Query:   49 QFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 318
            +FRPERFLEEESKVEANGNDF+Y+PFGVGRRSCP             GRLVQNFELLPPPGQSKIDTAEKGGQFSL ILKHSTIV KPRS
Sbjct:  416 EFRPERFLEEESKVEANGNDFKYIPFGVGRRSCPGIILALPILGIVIGRLVQNFELLPPPGQSKIDTAEKGGQFSLQILKHSTIVCKPRS 505          
BLAST of EH117777 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.154e-33
Identity = 69/89 (77.53%), Postives = 72/89 (80.90%), Query Frame = -1
Query:   49 FRPERFLEEESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 315
            FRPERFLEEES VEANGNDFRY+PFGVGRRSCP             GR+VQNFELLPPPGQSKIDT+EKGGQFSL IL HSTIV KPRS
Sbjct:  416 FRPERFLEEESGVEANGNDFRYIPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKIDTSEKGGQFSLFILNHSTIVLKPRS 504          
BLAST of EH117777 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.039e-32
Identity = 66/90 (73.33%), Postives = 72/90 (80.00%), Query Frame = -1
Query:   49 QFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPXXXXXXXXXXXXXGRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVAKPRS 318
            +FRPERF EEES VEANGNDFRY+PFGVGRRSCP             GR+VQNFELLPPPGQSK+DT+EKGGQFSLHIL HS IV KPR+
Sbjct:  415 EFRPERFFEEESHVEANGNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGGQFSLHILNHSIIVMKPRN 504          
The following BLAST results are available for this feature:
BLAST of EH117777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TCMO_ZINEL2.574e-3580.90Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_PETCR7.489e-3580.00Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_RUTGR9.154e-3377.53Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
TCMO_ARATH2.039e-3273.33Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionfjfw9 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117777 ID=EH117777; Name=EH117777; organism=Citrus sinensis; type=EST; length=327bp
GATGAGTCCTGAGTAACACTACAACCAAATGGAATTGTGAAACTAGAATG
ATCTAGGCTTGGCAACAATGGTCGAGTGCTTCAAAATGTGCAAACTGAAC
TGCCCACCTTTCTCTGCAGTGTCAATCTTAGATTGACCTGGAGGAGGCAA
GAGCTCAAAGTTCTGTACCAAACGCCCAATAGTGATACCAAGAATTGGCA
AAGCAAGGATAATTCCAGGGCAGCTTCTTCTCCCAACACCGAAAGGAAGG
TAACGGAAGTCATTTCCATTAGCCTCAACCTTGGACTCCTCCTCCAAAAA
CCTCTCAGGCCTGAATTGGTACGCAGT
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