EY664780

Overview
NameEY664780
Unique NameEY664780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664780_ssr463 microsatellite EY664780_ssr463:463..474. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664780 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   12 HRIFSEEVPVLDGHFGKFGMDSTDFVMGNPDNT*RWHVYSAS-AEARSHVNPDYTLKMCMTGLDRKKASVFYKTNESSSAMMTADSGITNILPKSDICDYEFDPCGYSMNSMEGDAES-TIHVTPEDGCNHASLEAVGYNFVRVNTTPLLERVLACFKPDEFSAAL 503
            HR F EE+  L+  F     +   + MG   N+  W++Y+    E+R    PD TL++ M+ LD      FY  +  ++  +T +SGI +++P S I    F+PCGYSMN M+ D    TIH+TPE   ++ S E    N  + +   L+ +V+  FKP +F   L
Sbjct:  127 HRNFQEEIEFLNAIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVINQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of EY664780 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   12 HRIFSEEVPVLDGHFGKFGMDSTDFVMGNPDNT*RWHVYSAS-AEARSHVNPDYTLKMCMTGLDRKKASVFYKTNESSSAMMTADSGITNILPKSDICDYEFDPCGYSMNSMEGDAES-TIHVTPEDGCNHASLEAVGYNFVRVNTTPLLERVLACFKPDEFSAAL 503
            HR F EE+  L+  F     +   + MG   N+  W++Y+    E+R    PD TL++ M+ LD      FY  +  ++  +T +SGI +++P S I    F+PCGYSMN M+ D    TIH+TPE   ++ S E    N  + +   L+ +V+  FKP +F   L
Sbjct:  127 HRNFQEEIEFLNVIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of EY664780 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 56/166 (33.73%), Postives = 87/166 (52.41%), Query Frame = 3
Query:   12 HRIFSEEVPVLDGHFGKFGMDSTDFVMGNPDNT*RWHVYSAS-AEARSHVNPDYTLKMCMTGLDRKKASVFYKTNESSSAMMTADSGITNILPKSDICDYEFDPCGYSMNSMEGDAES-TIHVTPEDGCNHASLEAVGYNFVRVNTTPLLERVLACFKPDEFSAAL 503
            HR F EE+  L+  F     +   + MG   N+  W++Y+    E+R    PD TL++ M+ LD      FY  +  ++  +T +SGI +++P S I    F+PCGYSMN M+ D    TIH+TPE   ++ S E    N  + +   L+ +V+  FKP +F   L
Sbjct:  127 HRNFQEEIEFLNVIFP----NGAAYCMGRM-NSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of EY664780 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 3
Query:   12 HRIFSEEVPVLDGHFGKFGMDSTDFVMGNPDNT*RWHVYSASAEAR--SHVNPDYTLKMCMTGLDRKKASVFYKTNESSSAMMTADSGITNILPK-SDICDYEFDPCGYSMNSMEGDAE--STIHVTPEDGCNHASLEAVGYNFVRVNTTPLLERVLACFKPDEFSAALHYDIVGDEHGD 536
            H+ F  EV  LD  F    +D   + +G+     RW++Y+   E    +H  PD+TL++ M+ LD +    F K            +GI  I+P  +D+ D  FDPCGYSMN+   D +  +TIHVTPE   + AS E    N   V       +VL CF+P++    +  + + ++  D
Sbjct:  142 HKNFDAEVEYLDSFF----VDGHAYCLGSLKQD-RWYLYTFHREVEFPAHKQPDHTLEILMSDLDEEVLHKFTKDYAVDGNDCFMRAGIDKIIPAGADVHDELFDPCGYSMNAYMNDTDQYATIHVTPEKAFSFASFET---NQDLVCLYSQTRKVLQCFRPNKILMTVFANDISEKGKD 313          
BLAST of EY664780 vs. ExPASy Swiss-Prot
Match: DCAM_TRYBB (S-adenosylmethionine decarboxylase proenzyme OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 51/172 (29.65%), Postives = 83/172 (48.26%), Query Frame = 3
Query:   12 HRIFSEEVPVLDGHFGKFGMDSTDFVMGNPDNT*RWHVYSASAEARSHVNPDYTLKMCMTGLDRKKASVFYKTNE----SSSAMMTADSGITNILPKSDIC-DYEFDPCGYSMNSMEGDAESTIHVTPEDGCNHASLEAVGYNFVRVNTTPLLERVLACFKPDEFSAALHYD 512
            H   +EE   L  HF         F+ G P ++  + +Y  S   +   + D  L M M GLDR +   +Y          +A++   +G++ ++  S I  D +++PCGYS+N++ G    TIH+TPE+ C+ AS E    N   +N +  +  VL  F P+ FS  +  D
Sbjct:  143 HLSMAEEFKTLRSHFPS----GQPFIFG-PIDSDHYFLYLDSDVVQPSCSDDAQLSMTMYGLDRNQTKHWYSDKMLPTGPETAVIREATGLSEVVDDSWILHDLQYEPCGYSINAIRGSEYQTIHITPEEHCSFASYET---NTCALNYSKCICGVLRVFDPERFSVIVFID 306          
BLAST of EY664780 vs. ExPASy Swiss-Prot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis GN=amd1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 3
Query:   12 HRIFSEEVPVLDGHFGKFGMDSTDFVMGNPDNT*RWHVYSASAEARSHVN-PDYTLKMCMTGLDRKKASVFYKTNESSSAMMTADSGITNILPKSDICDYEFDPCGYSMNSMEGDAES-TIHVTPEDGCNHASLEAVGYNFVRVNTTPLLERVLACFKPDEFSAAL 503
            HR F EEV  L+  F     +   + MG   N+  W++Y+        ++ PD TL++ M+ LD +    FY     ++  +T  SGI +++  S I    F PCGYSMN M+ D    TIH+TPE   ++ S E    N        L+ +V+  FKP +F   L
Sbjct:  129 HRNFHEEVEFLNQIFP----NGAAYCMGRI-NSDCWYLYTLDIPDEYVISQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSGIRDLITGSVIDATMFSPCGYSMNGMKSDGTYWTIHITPEPDFSYVSFET---NVSLTTYDDLISKVVDVFKPRKFVTTL 286          
BLAST of EY664780 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 52/175 (29.71%), Postives = 75/175 (42.86%), Query Frame = 3
Query:   12 HRIFSEEVPVLDGHFGKFGMDSTDFVMGNPDNT*RWHVYSASAEARSHVNPDYTLKMCMTGLDRKKASVFYKTNESSSAMMTADSGITNILPKSDICDYE-FDPCGYSMNSM--EGDAESTIHVTPEDGCNHASLEAVGYNFVRVNTTPLLERVLACFKPDEFSAALHYDIVGDE 527
            H  F  EV  L+ HF       + + +G P    RW +Y+          P++TL++ M GL     S F              S I  ILP   +   E F PCGYS+N +    D   TIHVTPE   ++ S E    N   +N    + +VL  FKP +F   +  + + +E
Sbjct:  146 HSSFETEVDYLEEHFA----GGSAYCIG-PQRQDRWFLYTMVTPQAVFPFPEHTLEILMNGLPEDVLSTFSPNVSKDGKDCRMKSAINTILPPDIVVHEELFSPCGYSLNGLIPHSDHYITIHVTPEPDFSYVSFET---NQHTLNLCEQMLKVLEIFKPSKFLLTIFTNELSNE 312          
The following BLAST results are available for this feature:
BLAST of EY664780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM_MESAU2.392e-1533.73S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM2_MUSSP4.080e-1533.73S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE4.080e-1533.73S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_CAEEL2.025e-1431.67S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_TRYBB4.988e-1329.65S-adenosylmethionine decarboxylase proenzyme OS=Tr... [more]
DCAM_XENLA5.514e-1232.53S-adenosylmethionine decarboxylase proenzyme OS=Xe... [more]
DCAM_ONCVO3.574e-1129.71S-adenosylmethionine decarboxylase proenzyme OS=On... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-070-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664780 ID=EY664780; Name=EY664780; organism=Citrus sinensis; type=EST; length=794bp
CACACATTTTCCACCGTATCTTCTCTGAGGAAGTACCTGTCCTTGATGGA
CACTTTGGCAAGTTTGGTATGGACAGCACAGATTTTGTCATGGGTAATCC
TGACAACACATAAAGATGGCATGTTTACTCTGCCTCTGCTGAAGCAAGAA
GCCATGTAAACCCAGATTACACTCTAAAGATGTGCATGACTGGTTTGGAC
AGAAAGAAGGCATCTGTCTTCTACAAAACTAATGAAAGCTCATCCGCTAT
GATGACCGCAGACTCTGGCATCACAAATATTCTTCCAAAATCTGATATTT
GTGATTATGAATTCGACCCTTGTGGTTACTCCATGAATAGTATGGAAGGG
GATGCAGAATCTACTATACACGTCACACCTGAAGATGGTTGCAATCATGC
AAGTTTAGAGGCTGTGGGTTATAATTTTGTAAGAGTGAACACGACTCCCT
TGCTTGAGAGGGTGCTTGCTTGCTTCAAACCCGATGAGTTTTCTGCTGCT
CTGCATTATGACATTGTTGGCGATGAACATGGAGACACCTTCATGCTGGA
CTTGAATGGATATTCCTGAGCAGACAAGAATATGAAGATCTCGGTAATAC
TGGCTCGCTGATCTACTACATCTTTACGAGGGCTGATAGCTCCACATCTC
CTAAGTCTATCTTGAAATGCTGTTGGAGCGACGACCAAAATGACCACAGG
ATTGCAGGGAAATANTGTGCATGATATATCATCGCGTCTGGTGTTTGCAT
AGTATNGCTTCACTATATAATGAAACGCGCGATGGTTAATGTAC
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