EH117771

Overview
NameEH117771
Unique NameEH117771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length239
Libraries
Library NameType
Different expression profile of FJWC and FJ72-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.324e-26
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R+SGGNDK+GFPMKQGVL   RVRLL+SKGHS YRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.324e-26
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R+SGGNDK+GFPMKQGVL   RVRLL+SKGHS YRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.324e-26
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R+SGGNDK+GFPMKQGVL   RVRLL+SKGHS YRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.324e-26
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R+SGGNDK+GFPMKQGVL   RVRLL+SKGHS YRPRRTGERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIV 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.259e-26
Identity = 54/71 (76.06%), Postives = 65/71 (91.55%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R+SGGNDK+GFPMKQGVL   RVRLL+SKGHS YRPRRTGERKRKSVRGCIV ++L+VL+LV++
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVII 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.409e-25
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            +FKGYVF++SGGNDK+GFPMKQGVLLP R++LL++K  S YRPRR GERKRKSVRG IVG DLAVL+LV+V
Sbjct:   44 EFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIV 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_MANSE (40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.409e-25
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV RV+GGNDK+GFPMKQGVL   RVRLLMSKGHS YRPRR GERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_SPOFR (40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.840e-25
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R++GGNDK+GFPMKQGVL   RVRLLMSKGHS YRPRR GERKRKSVRGCIV ++L+VL+LV+V
Sbjct:   44 EWKGYVLRIAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.840e-25
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGYV R+SGGNDK+GFPMKQGVL   RVRLL+ K HS YRPRRTGERKRKSVRGCIV S+L+VLSLV++
Sbjct:   44 EWKGYVVRISGGNDKQGFPMKQGVLTATRVRLLLDKNHSCYRPRRTGERKRKSVRGCIVDSNLSVLSLVII 114
[Close]
BLAST of EH117771 vs. ExPASy Swiss-Prot
Match: RS6_GLOMM (40S ribosomal protein S6 OS=Glossina morsitans morsitans GN=RpS6 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.099e-25
Identity = 52/71 (73.24%), Postives = 64/71 (90.14%), Query Frame = -1 
Query:   18 QFKGYVFRVSGGNDKRGFPMKQGVLLPHRVRLLMSKGHSYYRPRRTGERKRKSVRGCIVGSDLAVLSLVVV 230
            ++KGY+ R+SGGNDK+GFPMKQGVL   RVRLL+ KGHS YRPRRTGERKRKSVRGCIV ++++VL+LV+V
Sbjct:   44 EWKGYMLRISGGNDKQGFPMKQGVLTHDRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVIV 114
The following BLAST results are available for this feature:
BLAST of EH117771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS6_MACFA6.324e-2677.4640S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN6.324e-2677.4640S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_CHICK6.324e-2677.4640S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_BOVIN6.324e-2677.4640S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_ICTPU8.259e-2676.0640S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_YEAST1.409e-2576.0640S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_MANSE1.409e-2577.4640S ribosomal protein S6 OS=Manduca sexta GN=RpS6 ... [more]
RS6_SPOFR1.840e-2576.0640S ribosomal protein S6 OS=Spodoptera frugiperda ... [more]
RS6_APLCA1.840e-2576.0640S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_GLOMM4.099e-2573.2440S ribosomal protein S6 OS=Glossina morsitans mor... [more]

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Properties
Property NameValue
Genbank descriptionfjfw4 Different expression profile of FJWC and FJ72-1 Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH117771 ID=EH117771; Name=EH117771; organism=Citrus sinensis; type=EST; length=239bp
GACGATGAGTCCTGAGTAACTACAACGAGAGACAAGACAGCGAGGTCAGA
ACCAACGATACAACCACGAACGGACTTCCTCTTACGTTCACCAGTACGGC
GAGGACGATAATAAGAGTGACCCTTGGACATCAAGAGACGAACACGGTGA
GGTAAGAGAACACCTTGCTTCATGGGGAAACCTCGCTTATCGTTACCACC
AGAGACACGGAAAACGTAACCCTTGAATTGGTACGCAGT
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