CX672352

Overview
NameCX672352
Unique NameCX672352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.268e-59
Identity = 111/145 (76.55%), Postives = 126/145 (86.90%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  254 TLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_SCLS1 (ATP-dependent RNA helicase eIF4A OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tif1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.880e-59
Identity = 111/145 (76.55%), Postives = 126/145 (86.90%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDMDQ  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D RM+ +I++FY+  IEE+P NVADL+
Sbjct:  254 TLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.986e-59
Identity = 111/145 (76.55%), Postives = 126/145 (86.90%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  254 TLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 398          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.986e-59
Identity = 111/145 (76.55%), Postives = 126/145 (86.90%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVADL+
Sbjct:  277 TLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVADLI 421          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 106/145 (73.10%), Postives = 125/145 (86.21%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLYET+ +TQ+VIF NTRRKVDWLT+++  RD TVS+ HGDMDQ  RD +M EFR+GSSR+LITTDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGV+INFVT DD RM+ +I++FYN  IEE+P N+ADL+
Sbjct:  248 TLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 108/145 (74.48%), Postives = 127/145 (87.59%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL+ITQSVIF NTRRKVD LT +M   + TVSA HGDM+Q  R++IM++FRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINF+T DD R+L DI++FY+  IEE+PAN+ADL+
Sbjct:  259 TLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANIADLI 403          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 109/142 (76.76%), Postives = 123/142 (86.62%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVA 427
            TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD RM+ +I++FY+  IEE+P NVA
Sbjct:  254 TLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQFYSTQIEEMPMNVA 395          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.411e-57
Identity = 105/145 (72.41%), Postives = 124/145 (85.52%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLYET+ ITQ+VIF +TRRKVDWLT ++  R  TVSA HGDM Q  R++IM+EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFV+ +D+ ML +I+ +YN  +EE+P NVADL+
Sbjct:  257 TLCDLYETVTITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSNEDKNMLEEIETYYNTQVEEMPLNVADLI 401          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.447e-56
Identity = 107/145 (73.79%), Postives = 124/145 (85.52%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  254 TLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.447e-56
Identity = 107/145 (73.79%), Postives = 124/145 (85.52%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R+L DI+ +Y+  I+E+P NVADLL
Sbjct:  254 TLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDIELYYSTQIDEMPMNVADLL 398          
The following BLAST results are available for this feature:
BLAST of CX672352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_ASPNC5.268e-5976.55ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_SCLS16.880e-5976.55ATP-dependent RNA helicase eIF4A OS=Sclerotinia sc... [more]
IF4A_NEOFI8.986e-5976.55ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_EMENI8.986e-5976.55ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_SCHPO3.415e-5873.10ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
IF4A_DROME1.298e-5774.48Eukaryotic initiation factor 4A OS=Drosophila mela... [more]
IF4A_ASPFU2.213e-5776.76ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_CRYNE8.411e-5772.41ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
FAL1_NEOFI2.447e-5673.79ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI2.447e-5673.79ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_16D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D10-H20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672352 ID=CX672352; Name=CX672352; organism=Citrus sinensis; type=EST; length=733bp
GACACTATGCGATCTGTACGAGACTTTGGCAATCACCCAAAGTGTCATCT
TTGTGAACACCCGGCGTAAGGTAGATTGGCTGACAGATAAGATGCGTAGT
CGTGATCATACCGTGTCTGCCACCCACGGTGACATGGACCAAAACACTAG
GGACATCATCATGCGTGAATTCCGGTCTGGTTCGTCTCGTGTGCTTATCA
CTACTGATCTCTTGGCACGTGGTATTGATGTCCAGCAAGTGTCCCTGGTC
ATAAATTATGATCTTCCTACACAGCCAGAAAACTACCTGCATCGTATAGG
TCGTAGTGGACGATTTGGAAGAAAGGGTGTTGCCATTAATTTCGTGACCA
GGGATGATGAAAGGATGCTGTTTGATATTCAAAAGTTTTACAATGTCGTA
ATTGAAGAGCTGCCAGCAAATGTTGCTGATCTCCTGTGATGTGTTTTTGG
ATTGGTAAGGTGTTTTTGAAGTTTGAAGTCTAGTCATTATGGTGGGTCTG
GAGTGGTTGCTAAAAGAACCCTACAATTATGGCATTTGGAATGGCCTTTG
TTTAAGTTTATGTTGCATCTGTTGTAGGTTTGCATTAAATTATGTTGTTC
TACACTTTTTTTTTAATTGTTGTGCGACATTATGTAGAGTTGGAGCATGG
CTAGTTTATTTGTCTTAGGAAAACTCGACTTGCTTGCTTATTGCTTTTTA
AAGTTATTTGGCTTGTTCTTTCATCTAAAAAAA
back to top