CX672352
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18 Identity = 43/131 (32.82%), Postives = 80/131 (61.07%), Query Frame = 2 Query: 44 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPANVADL 433 +IF ++ VD + + + + + HGD Q+ R+ ++ FR G VL+ TD+ ++G+D ++ VIN+D+P + ENY+HRIGR+GR G KGVA F+ +++ E +L D++ +++P + ++ Sbjct: 478 LIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEI 608
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DBP8_YEAST (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae GN=DBP8 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18 Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2 Query: 8 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 409 C+ YE ++IFVN + L ++ + V++ H M Q R + FR+ ++R+LI TD+ +RG+D+ V LV+NYD+P+ P+ ++HR GR+ R GR G AI+FVT+ D + I+ N + E Sbjct: 249 CEEYENKT---AIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTE 379
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DBP8_YEAS7 (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP8 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18 Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2 Query: 8 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 409 C+ YE ++IFVN + L ++ + V++ H M Q R + FR+ ++R+LI TD+ +RG+D+ V LV+NYD+P+ P+ ++HR GR+ R GR G AI+FVT+ D + I+ N + E Sbjct: 249 CEEYENKT---AIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTE 379
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DBP10_GIBZE (ATP-dependent RNA helicase DBP10 OS=Gibberella zeae GN=DBP10 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18 Identity = 43/116 (37.07%), Postives = 72/116 (62.07%), Query Frame = 2 Query: 41 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 388 ++IF T+ V++L + + VS +G +DQ R I + +FR G + +L+ TD+ ARGID+ ++ VIN+D P QP+ ++HR+GR+ R G++G + + V D L D+Q F Sbjct: 358 TIIFTATKHHVEYLANLLIYAGFAVSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGWSYSLVRDTDAPYLIDLQLF 473
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18 Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = 2 Query: 44 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVAD 430 +IF T+ + L+ + + +A HGD++QN R + F++G +L+ TD+ ARG+D+ V +V+NYD+P ++Y+HR+GR+ R GR G +I+ V++ D ++ I++ V+ ++LP D Sbjct: 325 IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE---VLGKKLPKESVD 450
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18 Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 2 Query: 38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN-----------VVIEELPANV 424 ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N ++E++PA V Sbjct: 258 KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPV 397
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18 Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 2 Query: 38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN-----------VVIEELPANV 424 ++++F NT+ + L + H V GD+ Q R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+I+F + L I+ + N ++E++PA V Sbjct: 258 KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPV 397
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18 Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 343 ++++F NT+ + + D +++ H V GD+ QN R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+ G +I+F Sbjct: 255 KAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18 Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2 Query: 38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL-PANVADLL 436 ++++F T+R D ++ + S A HGD+ Q+ R+ + FR G VL+ TD+ +RG+D+ V LVI+Y+LP PE ++HR GR+GR G++G AI T +R + +++ E + P V DLL Sbjct: 353 KTIVFTQTKRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLL 485
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18 Identity = 43/131 (32.82%), Postives = 76/131 (58.02%), Query Frame = 2 Query: 44 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPANVADL 433 ++F + VD++ + + + A HG DQ R+ + F++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+ ++ E L D++ + +P +A+L Sbjct: 437 LVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAEL 567 The following BLAST results are available for this feature:
BLAST of CX672352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672352 ID=CX672352; Name=CX672352; organism=Citrus sinensis; type=EST; length=733bpback to top |