CX672352

Overview
NameCX672352
Unique NameCX672352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DDX41_DICDI (Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium discoideum GN=ddx41 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 43/131 (32.82%), Postives = 80/131 (61.07%), Query Frame = 2
Query:   44 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPANVADL 433
            +IF   ++ VD + + +  +     + HGD  Q+ R+  ++ FR G   VL+ TD+ ++G+D  ++  VIN+D+P + ENY+HRIGR+GR G KGVA  F+ +++ E +L D++       +++P  + ++
Sbjct:  478 LIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEI 608          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DBP8_YEAST (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae GN=DBP8 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2
Query:    8 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 409
            C+ YE      ++IFVN     + L   ++  +  V++ H  M Q  R   +  FR+ ++R+LI TD+ +RG+D+  V LV+NYD+P+ P+ ++HR GR+ R GR G AI+FVT+ D   +  I+   N  + E
Sbjct:  249 CEEYENKT---AIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTE 379          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DBP8_YEAS7 (ATP-dependent RNA helicase DBP8 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP8 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2
Query:    8 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 409
            C+ YE      ++IFVN     + L   ++  +  V++ H  M Q  R   +  FR+ ++R+LI TD+ +RG+D+  V LV+NYD+P+ P+ ++HR GR+ R GR G AI+FVT+ D   +  I+   N  + E
Sbjct:  249 CEEYENKT---AIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTE 379          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: DBP10_GIBZE (ATP-dependent RNA helicase DBP10 OS=Gibberella zeae GN=DBP10 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 43/116 (37.07%), Postives = 72/116 (62.07%), Query Frame = 2
Query:   41 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 388
            ++IF  T+  V++L + +      VS  +G +DQ  R I + +FR G + +L+ TD+ ARGID+  ++ VIN+D P QP+ ++HR+GR+ R G++G + + V   D   L D+Q F
Sbjct:  358 TIIFTATKHHVEYLANLLIYAGFAVSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGRTARAGQRGWSYSLVRDTDAPYLIDLQLF 473          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RRP3_YEAS7 (ATP-dependent rRNA helicase RRP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = 2
Query:   44 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVAD 430
            +IF  T+   + L+      + + +A HGD++QN R   +  F++G   +L+ TD+ ARG+D+  V +V+NYD+P   ++Y+HR+GR+ R GR G +I+ V++ D  ++  I++   V+ ++LP    D
Sbjct:  325 IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE---VLGKKLPKESVD 450          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN-----------VVIEELPANV 424
            ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N            ++E++PA V
Sbjct:  258 KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPV 397          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN-----------VVIEELPANV 424
            ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+I+F   +    L  I+ + N            ++E++PA V
Sbjct:  258 KAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPV 397          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 343
            ++++F NT+   + + D +++  H V    GD+ QN R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+ G +I+F
Sbjct:  255 KAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2
Query:   38 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL-PANVADLL 436
            ++++F  T+R  D ++  + S      A HGD+ Q+ R+  +  FR G   VL+ TD+ +RG+D+  V LVI+Y+LP  PE ++HR GR+GR G++G AI   T   +R +  +++      E + P  V DLL
Sbjct:  353 KTIVFTQTKRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLL 485          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 43/131 (32.82%), Postives = 76/131 (58.02%), Query Frame = 2
Query:   44 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPANVADL 433
            ++F   +  VD++ + +  +     A HG  DQ  R+  +  F++G   VL+ TD+ ++G+D   +  VINYD+P + ENY+HRIGR+GR G+ G+A  F+ ++  E  L D++       + +P  +A+L
Sbjct:  437 LVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPPVLAEL 567          
The following BLAST results are available for this feature:
BLAST of CX672352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX41_DICDI2.025e-1832.82Probable ATP-dependent RNA helicase ddx41 OS=Dicty... [more]
DBP8_YEAST2.025e-1835.82ATP-dependent RNA helicase DBP8 OS=Saccharomyces c... [more]
DBP8_YEAS72.025e-1835.82ATP-dependent RNA helicase DBP8 OS=Saccharomyces c... [more]
DBP10_GIBZE2.025e-1837.07ATP-dependent RNA helicase DBP10 OS=Gibberella zea... [more]
RRP3_YEAS72.645e-1833.33ATP-dependent rRNA helicase RRP3 OS=Saccharomyces ... [more]
RHLB_SHESW2.645e-1835.71ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RHLB_SHEPC2.645e-1835.71ATP-dependent RNA helicase rhlB OS=Shewanella putr... [more]
RHLB_PSEA62.645e-1841.18ATP-dependent RNA helicase rhlB OS=Pseudoalteromon... [more]
RH3_ARATH2.645e-1835.82DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH35A_ORYSJ2.645e-1832.82DEAD-box ATP-dependent RNA helicase 35A OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D10-H20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672352 ID=CX672352; Name=CX672352; organism=Citrus sinensis; type=EST; length=733bp
GACACTATGCGATCTGTACGAGACTTTGGCAATCACCCAAAGTGTCATCT
TTGTGAACACCCGGCGTAAGGTAGATTGGCTGACAGATAAGATGCGTAGT
CGTGATCATACCGTGTCTGCCACCCACGGTGACATGGACCAAAACACTAG
GGACATCATCATGCGTGAATTCCGGTCTGGTTCGTCTCGTGTGCTTATCA
CTACTGATCTCTTGGCACGTGGTATTGATGTCCAGCAAGTGTCCCTGGTC
ATAAATTATGATCTTCCTACACAGCCAGAAAACTACCTGCATCGTATAGG
TCGTAGTGGACGATTTGGAAGAAAGGGTGTTGCCATTAATTTCGTGACCA
GGGATGATGAAAGGATGCTGTTTGATATTCAAAAGTTTTACAATGTCGTA
ATTGAAGAGCTGCCAGCAAATGTTGCTGATCTCCTGTGATGTGTTTTTGG
ATTGGTAAGGTGTTTTTGAAGTTTGAAGTCTAGTCATTATGGTGGGTCTG
GAGTGGTTGCTAAAAGAACCCTACAATTATGGCATTTGGAATGGCCTTTG
TTTAAGTTTATGTTGCATCTGTTGTAGGTTTGCATTAAATTATGTTGTTC
TACACTTTTTTTTTAATTGTTGTGCGACATTATGTAGAGTTGGAGCATGG
CTAGTTTATTTGTCTTAGGAAAACTCGACTTGCTTGCTTATTGCTTTTTA
AAGTTATTTGGCTTGTTCTTTCATCTAAAAAAA
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