CX672352

Overview
NameCX672352
Unique NameCX672352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 7.368e-53
Identity = 99/145 (68.28%), Postives = 122/145 (84.14%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+GRKGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  267 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.368e-53
Identity = 99/145 (68.28%), Postives = 122/145 (84.14%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+GRKGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  270 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 414          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_AJECN (ATP-dependent RNA helicase FAL1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.368e-53
Identity = 100/140 (71.43%), Postives = 119/140 (85.00%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPAN 421
            TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HG+M Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+ +Y+  I+E+P N
Sbjct:  254 TLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYSTQIDEMPMN 393          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.776e-52
Identity = 98/145 (67.59%), Postives = 121/145 (83.45%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL ITQ+VIF NT+RKVDWLT+KMR  + TVS+ HGDM Q  R+ IM+EFRSG+SRVLI+TD+ ARG+DV QVSL+INYDLP   E Y+HRIGRSGR+G KGVAINFV  DD R+L DI+++Y+  I+E+P NVADL+
Sbjct:  271 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 415          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.237e-52
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL ITQ+VIF NT++KVDWLT +M+  + TV + HGDM Q  RD IM EFRSG SRVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINF T DD   L DI+++Y+  I+E+P NV D++
Sbjct:  253 TLCDLYDTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDIEQYYSTQIDEMPVNVTDMM 397          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_USTMA (ATP-dependent RNA helicase FAL1 OS=Ustilago maydis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.146e-52
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+TL ITQ+VIF NTRRKVDWL+ KM+  +  VS+ HG+M Q  RD +M EFR GSSRVLITTD+ ARGID+  +SLVINYDLPT  ENY+HRIGRSGRFGRKGVAINFVT DD R L DI++FY+  I+E+P  + D+L
Sbjct:  253 TLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDML 397          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.390e-51
Identity = 95/144 (65.97%), Postives = 121/144 (84.03%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            LCDLYET+ ++Q+VIF NTRRKVD+LT  +   D TVS+ HG+ +Q+ RD+IM+ FR+GSSR+LITTDLLARGIDVQQVSLVIN+DLP+  ENY+HRIGR GRFGRKGVAINFVT +D  ML ++++FY+  I E+P N+ADL+
Sbjct:  252 LCDLYETINVSQAVIFCNTRRKVDYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVINFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSEDHGMLKELERFYSTEIVEMPTNIADLI 395          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.370e-51
Identity = 96/143 (67.13%), Postives = 120/143 (83.92%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 433
            LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q+ RD IM EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D  M+ +I+KFY+  IEE+PAN+ +L
Sbjct:  252 LCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIEKFYSTQIEEMPANIGEL 394          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.096e-51
Identity = 97/145 (66.90%), Postives = 121/145 (83.45%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY++L ITQ+VIF NT+ KV+WLTD+M+  + TV A HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN VT++D   L DI++FY + I+E+P NV D++
Sbjct:  255 TLCDLYDSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDIERFYRIRIKEMPVNVNDIM 399          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.007e-51
Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+ L ITQ+VIF NT+ KV+WLTD+MR ++ TV + HGDM Q+ RD IM +FR+G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKGVAIN +T++D   L D +K+Y+  I E+P N+ D++
Sbjct:  255 TLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIREMPMNINDIM 399          
The following BLAST results are available for this feature:
BLAST of CX672352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_BOVIN7.368e-5368.28Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
I4A3B_XENLA7.368e-5368.28Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
FAL1_AJECN7.368e-5371.43ATP-dependent RNA helicase FAL1 OS=Ajellomyces cap... [more]
I4A3A_XENLA4.776e-5267.59Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
FAL1_YARLI6.237e-5267.59ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
FAL1_USTMA8.146e-5267.59ATP-dependent RNA helicase FAL1 OS=Ustilago maydis... [more]
IF4A_YARLI1.390e-5165.97ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_PICGU2.370e-5167.13ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
FAL1_DEBHA3.096e-5166.90ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_PICST9.007e-5164.83ATP-dependent RNA helicase FAL1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D10-H20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672352 ID=CX672352; Name=CX672352; organism=Citrus sinensis; type=EST; length=733bp
GACACTATGCGATCTGTACGAGACTTTGGCAATCACCCAAAGTGTCATCT
TTGTGAACACCCGGCGTAAGGTAGATTGGCTGACAGATAAGATGCGTAGT
CGTGATCATACCGTGTCTGCCACCCACGGTGACATGGACCAAAACACTAG
GGACATCATCATGCGTGAATTCCGGTCTGGTTCGTCTCGTGTGCTTATCA
CTACTGATCTCTTGGCACGTGGTATTGATGTCCAGCAAGTGTCCCTGGTC
ATAAATTATGATCTTCCTACACAGCCAGAAAACTACCTGCATCGTATAGG
TCGTAGTGGACGATTTGGAAGAAAGGGTGTTGCCATTAATTTCGTGACCA
GGGATGATGAAAGGATGCTGTTTGATATTCAAAAGTTTTACAATGTCGTA
ATTGAAGAGCTGCCAGCAAATGTTGCTGATCTCCTGTGATGTGTTTTTGG
ATTGGTAAGGTGTTTTTGAAGTTTGAAGTCTAGTCATTATGGTGGGTCTG
GAGTGGTTGCTAAAAGAACCCTACAATTATGGCATTTGGAATGGCCTTTG
TTTAAGTTTATGTTGCATCTGTTGTAGGTTTGCATTAAATTATGTTGTTC
TACACTTTTTTTTTAATTGTTGTGCGACATTATGTAGAGTTGGAGCATGG
CTAGTTTATTTGTCTTAGGAAAACTCGACTTGCTTGCTTATTGCTTTTTA
AAGTTATTTGGCTTGTTCTTTCATCTAAAAAAA
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