CX672352

Overview
NameCX672352
Unique NameCX672352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.423e-50
Identity = 96/143 (67.13%), Postives = 119/143 (83.22%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 433
            LCDLY+++++TQ+VIF NTR KV++LT+K+R +  TVSA H D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+PA++  L
Sbjct:  253 LCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.423e-50
Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 358
            TL DLYET+ ITQ+VIF NTRRKVDWLTDK+ +RD TVSA HGDM+Q  RD+IM+EFRSGSSRVLI TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT DD
Sbjct:  254 TLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADD 372          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.958e-50
Identity = 95/143 (66.43%), Postives = 120/143 (83.92%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 433
            L DLY+++++TQ+VIF NTRRKV+ LT K+   + TVS+ + D+ Q  RD+IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLPT  ENY+HRIGR GRFGRKGVAINFVT +D   + +I+KFY+  IEELPA+VA++
Sbjct:  252 LSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREIEKFYSTQIEELPADVAEM 394          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.958e-50
Identity = 95/143 (66.43%), Postives = 117/143 (81.82%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 433
            LCDLY+++++TQ+VIF NTR KV++LT K++  + TVSA H D+ Q  RD IM EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I+KFY+  IEE+PA++  L
Sbjct:  253 LCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFYSTQIEEMPADIGAL 395          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.301e-49
Identity = 94/143 (65.73%), Postives = 119/143 (83.22%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 433
            LCDLY+++++TQ+VIF NTR KV++LT K+++ + TVSA H D+ Q  RD IM+EFRSGSSR+LI TDLLARGIDVQQVSLVINYDLP+  ENY+HRIGR GRFGRKGVAINFVT  D  M+ +I++FY+  IEE+PA++  L
Sbjct:  253 LCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTERDVGMMREIEQFYSTQIEEMPADIGAL 395          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.301e-49
Identity = 96/127 (75.59%), Postives = 110/127 (86.61%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 382
            TLCDLY+TL ITQ+VIF NTRRKVDWLTDKMR  + TVS+ HGDM Q  RD IM++FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLP+  ENY+HRIGRSGRFGRKGVAINFVT +D R+L DI+
Sbjct:  256 TLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIE 382          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.699e-49
Identity = 94/145 (64.83%), Postives = 119/145 (82.07%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCD+Y++L ITQ+VIF NT++KVD LT++MR  + TV++ HGDM Q  R+ I++ FRSG +RVLITTD+LARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKGVAINFV   D R+L DI++FY+  I+E+P N A ++
Sbjct:  261 TLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDIEQFYSTQIDEMPVNFASII 405          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.218e-49
Identity = 92/145 (63.45%), Postives = 117/145 (80.69%), Query Frame = 2
Query:    2 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            TLCDLY+ L ITQ+VIF NT+ KV+WL D+M+ ++ TV A HGDM Q+ RD IM +FR G+SRVLI+TD+ ARGIDVQQVSLVINYDLPT  ENY+HRIGRSGRFGRKG AIN +T+DD   L + +K+Y+  I+E+P N+ D++
Sbjct:  255 TLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEFEKYYSTKIKEMPMNINDIM 399          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.942e-49
Identity = 95/144 (65.97%), Postives = 119/144 (82.64%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELP+++A LL
Sbjct:  251 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
BLAST of CX672352 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.942e-49
Identity = 95/144 (65.97%), Postives = 119/144 (82.64%), Query Frame = 2
Query:    5 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 436
            L DLY+++++TQ+VIF NTRRKV+ LT K+R+   TVSA + D+ Q  RD IM+EFRSGSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAINFVT +D   + +++KFY+  IEELP+++A LL
Sbjct:  251 LTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 394          
The following BLAST results are available for this feature:
BLAST of CX672352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_CANAL3.423e-5067.13ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A_AJECN3.423e-5081.51ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_VANPO9.958e-5066.43ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_DEBHA9.958e-5066.43ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_PICST1.301e-4965.73ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
FAL1_CHAGB1.301e-4975.59ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
IF4A_DICDI1.699e-4964.83Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
FAL1_CANAL2.218e-4963.45ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]
IF4A_YEAST4.942e-4965.97ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS74.942e-4965.97ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D10-H20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672352 ID=CX672352; Name=CX672352; organism=Citrus sinensis; type=EST; length=733bp
GACACTATGCGATCTGTACGAGACTTTGGCAATCACCCAAAGTGTCATCT
TTGTGAACACCCGGCGTAAGGTAGATTGGCTGACAGATAAGATGCGTAGT
CGTGATCATACCGTGTCTGCCACCCACGGTGACATGGACCAAAACACTAG
GGACATCATCATGCGTGAATTCCGGTCTGGTTCGTCTCGTGTGCTTATCA
CTACTGATCTCTTGGCACGTGGTATTGATGTCCAGCAAGTGTCCCTGGTC
ATAAATTATGATCTTCCTACACAGCCAGAAAACTACCTGCATCGTATAGG
TCGTAGTGGACGATTTGGAAGAAAGGGTGTTGCCATTAATTTCGTGACCA
GGGATGATGAAAGGATGCTGTTTGATATTCAAAAGTTTTACAATGTCGTA
ATTGAAGAGCTGCCAGCAAATGTTGCTGATCTCCTGTGATGTGTTTTTGG
ATTGGTAAGGTGTTTTTGAAGTTTGAAGTCTAGTCATTATGGTGGGTCTG
GAGTGGTTGCTAAAAGAACCCTACAATTATGGCATTTGGAATGGCCTTTG
TTTAAGTTTATGTTGCATCTGTTGTAGGTTTGCATTAAATTATGTTGTTC
TACACTTTTTTTTTAATTGTTGTGCGACATTATGTAGAGTTGGAGCATGG
CTAGTTTATTTGTCTTAGGAAAACTCGACTTGCTTGCTTATTGCTTTTTA
AAGTTATTTGGCTTGTTCTTTCATCTAAAAAAA
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