CX672346

Overview
NameCX672346
Unique NameCX672346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_CANAL (Pre-rRNA-processing protein IPI3 OS=Candida albicans GN=IPI3 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.904e-17
Identity = 50/165 (30.30%), Postives = 92/165 (55.76%), Query Frame = 2
Query:  383 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWS---LLTVFEECESQRASHLYLHSFTGHTLRITDIVIG--YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAES 853
            +AGG +SG +Y+WE++SG LL    AHY+ +T +  S  G+FLI+G ED    +W+   L++++++ + Q   +  +   T +TL +TD+ +   +      + + SED T +++ ++   LL   + PS  + I  DPA    Y G  +G   SI + ++N+ +
Sbjct:  123 LAGGSKSGKLYIWELSSGNLLCVRDAHYQGITTIKGSSCGTFLITGGEDARCLVWNLAELISIYDKSDHQVKPYWQI---TDNTLPLTDLCLNDTHNINDLKLYTTSEDSTVRIYDIVTKSLLTTFILPSSAECITKDPANRALYVGLNNGLVRSIPLYSINSHT 284          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_LODEL (Pre-rRNA-processing protein IPI3 OS=Lodderomyces elongisporus GN=IPI3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16
Identity = 48/162 (29.63%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  383 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVF------------EECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 826
            + GG + G +Y+WE+ASG LL    AHY+ +T +  S  G+FL++G ED  + +W+L  +             +   +   S    +S T +TL ITD  +   G      + +AS+D T +++ +   + L   + P  +  +A DPA    YAG  +G I
Sbjct:  129 LCGGSKLGKLYIWELASGDLLCVKEAHYQGITRIDLSLCGTFLVTGGEDARIMVWNLADLIAIYGQAGLINETDSSSTVNRSGKPYYSITDNTLPITDFTLNQVGNLADLKLYTASKDSTVRIYDITTKQQLTTFILPQPVTCLARDPANRQLYAGLANGLI 290          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: PKWA_THECU (Probable serine/threonine-protein kinase pkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.349e-14
Identity = 59/205 (28.78%), Postives = 89/205 (43.41%), Query Frame = 2
Query:  284 SILYWSWSKPQVEVK----SLPAEPIKP-----------------IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID---AIALDPAEHVFYAGSRDGSI 826
            S L W W+ P+  ++    + P+E   P                 +A +  G+ +AGG     I++W+VASG  L     H   V  + FS DG+ L SGS+D  VR+W +    E              F GHT  + DI     G  + + S S D T ++W++  G    + V     D   A+A  P   +  +GSRDG+I
Sbjct:  420 SFLVWQWTLPETPLRPDSSTAPSESADPHELNEPRILTTDREAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERA-----------VFEGHTHYVLDIAFSPDG--SMVASGSRDGTARLWNVATG--TEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTI 609          

HSP 2 Score: 72.0182 bits (175), Expect = 4.797e-12
Identity = 54/204 (26.47%), Postives = 91/204 (44.61%), Query Frame = 2
Query:  110 LIASSSVADAGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 718
            ++AS S  D     W++ +G E    K      + +A      + +S  R+      G+I  W  +   + +V   PAE +  +A +  G+ +  G  S  +++W+VASG  L  +  H   V  + FS DG+ L SGS+D  +R+W +    E             +  GHT  +  +     G   T+ SASED T ++W +
Sbjct:  557 MVASGS-RDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRD------GTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDS-TVHLWDVASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHT-----------TLEGHTEPVHSVAFHPEG--TTLASASEDGTIRIWPI 739          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_ASHGO (Pre-rRNA-processing protein IPI3 OS=Ashbya gossypii GN=IPI3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.742e-14
Identity = 71/254 (27.95%), Postives = 118/254 (46.46%), Query Frame = 2
Query:  125 SVADAGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTYIAGGGQ-----------SGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG--YGG--VSATIVSASEDRTCKVWSLL----KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 823
            + A +G  C     G   LR +  AS P+    +G + L +   +   +  S      S SK +   + LP  E +  +A   + T  AG  Q           SG +Y+WE  SG+LL  K  AHY+A+T +    +G ++++   D  + IW   ++  E E +      L+    HTL ITD  +   + G  +++ + + SED T + + L     + +LL    FP  + +IALDPA+   Y G+R+G+
Sbjct:    8 TTAVSGTVCQVHSVGQANLR-QCAASTPNSAVLMGDKLLVAQANKALINVYSVD----SRSKKEALEQRLPLPEQLSCLAVVENHTGDAGVHQQLPYLLLGSTPSGKLYVWEAGSGKLLTVKAMAHYQAITKMQAIINGKYVVTAGADSRLIIWQTASLVLEEEPKP-----LYVLHDHTLAITDFAVSNAHNGKYLNSKLYTVSEDMTVRCYQLSSQLEQPQLLATFTFPLALTSIALDPADRCLYVGTREGA 251          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.142e-13
Identity = 46/161 (28.57%), Postives = 82/161 (50.93%), Query Frame = 2
Query:  347 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 826
            +  +A N  G+ +A G     + +WE++S + L  +  H   V+ + FS DG+ L SGS+D  VR+WS+ +   EC         L++F GHT  +  ++    G  A + S S D+T ++WS+  G+ L  +    + + +I   P   +  +GS D ++
Sbjct: 1287 VNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISS--GEC---------LYTFLGHTNWVGSVIFSPDG--AILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTV 1434          

HSP 2 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 42/168 (25.00%), Postives = 78/168 (46.43%), Query Frame = 2
Query:  347 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 847
            +  +  N  G+ +A G     + +WE+ S + L  +  H   V  +VF+ DGS L SGS D  VR+W +           +S   LH+F GHT  +  +     G  + + S S D+T ++W +   + L       S + ++   P   +  +GS D ++ + ++++
Sbjct: 1203 VNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI-----------SSSKCLHTFQGHTNWVNSVAFNPDG--SMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISS 1357          

HSP 3 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 41/127 (32.28%), Postives = 60/127 (47.24%), Query Frame = 2
Query:  356 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 736
            +A +  G   A G   G +  WE A+G+ L     H   V  + FSQDG  L SGS+D  VR+W +           +S   L +F GHT R+  +V  +   S  + S S D+T ++W +  G  L
Sbjct:  870 VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDI-----------SSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDISSGECL 983          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: PWP2_SCHPO (Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe GN=SPBC713.04c PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.491e-13
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  329 SLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRD 817
            S+    I  +  NS G +IA G  + G + +WE  S   + K  +HY A++ L +S DG  +I+G++DG +++W + + F            + +FT HT  ++ +     G    + S+S D + + W L++ R  R    PS +    IA+DP+  +  AGS+D
Sbjct:  293 SITQSNIDTLTVNSTGDWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQYSSDGQRIITGADDGKIKVWDMNSGF-----------CIVTFTQHTSAVSGLCFSKRG--NVLFSSSLDGSVRAWDLIRYRNFRTFTAPSRVQFSCIAVDPSGEIVCAGSQD 445          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.948e-13
Identity = 68/262 (25.95%), Postives = 120/262 (45.80%), Query Frame = 2
Query:   77 NKLVKSIKMELLIA-SSSVADAGIGCWD---LESGAEQLRYKSCA-SPPHGL-------ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-VIDAIALDPAEHVFYAGSRD 817
            N  + S K++ ++A SS+V+   +G      L +G E  R    A S P+ +       + VG     SS+ R    + SGS+  W     ++ +++L        + + H  G Y+A G    +I +W+V     + ++  H +AV CL FS DG +L S S+D  V++W L+           +   +  FT HT  +   V+ +      + S S DRT K+W L K  ++ +    + V+ ++  +P     Y+GS +
Sbjct:    5 NTTITSWKLQEIVAHSSNVSSLVLGKSSGRLLATGGEDCRVNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSGSLRLWDLEAAKI-LRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLI-----------AGKMITEFTSHTSAVN--VVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSEN 252          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: IPI3_CANGA (Pre-rRNA-processing protein IPI3 OS=Candida glabrata GN=IPI3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 53/173 (30.64%), Postives = 79/173 (45.66%), Query Frame = 2
Query:  383 IAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG--YGGVSAT----IVSASEDRT--CKVWSLLKG------------------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 820
            + G    G IY WE+ SG LL  K  AHY+ +T +    DG + I+  +D  V +W  +       S+      LH    H L + DI +   +G   +T    + +ASED T  C  +S L+G                  RLL    FP+ I+A++LDPA+   Y G+ +G
Sbjct:  104 LLGSTDGGKIYCWELNSGALLSVKQMAHYQGITKIKSFMDGKYFITSGKDSRVIVWQTIDFVSNNASEPKPICILHD---HNLTVNDIAVSMTHGANMSTSGAKLFTASEDSTVRCYDFSFLRGDFRKNRKSQEQDQKMYQPRLLATFTFPAAIEAMSLDPADRALYVGTSEG 273          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: PWP2_YEAST (Periodic tryptophan protein 2 OS=Saccharomyces cerevisiae GN=PWP2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 45/170 (26.47%), Postives = 81/170 (47.65%), Query Frame = 2
Query:  317 VEVKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRD 817
            ++  S+   P+  ++ N  G ++A G  + G + ++E  S   + K   H+ +   L +S DGS +++ SEDG +++W + + F            L +F  HT  +T +     G    + S+S D T + W L++ R  R       I  + +A+DP+  V  AGS D
Sbjct:  295 IQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGF-----------CLATFEEHTSSVTAVQFAKRG--QVMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLD 451          
BLAST of CX672346 vs. ExPASy Swiss-Prot
Match: PWP2_PONAB (Periodic tryptophan protein 2 homolog OS=Pongo abelii GN=PWP2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.381e-11
Identity = 43/166 (25.90%), Postives = 81/166 (48.80%), Query Frame = 2
Query:  329 SLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVASGRLLKKWHAHYRAVTCLVFSQDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAGSRD 817
            S+  + I  +A NS G +IA G    G + +WE  S   + K   H+ ++  L +S DG ++++G +DG V++W+ L+ F              +FT H+  +T +   +      +V++S D T + + L + R  R      P+    +A+D +  +  AG++D
Sbjct:  324 SISDQSIASVAINSSGDWIAFGCSGLGQLLVWEWQSESYVLKQQGHFNSMVALAYSPDGQYIVTGGDDGKVKVWNTLSGF-----------CFVTFTEHSSGVTGVT--FTATGYVVVTSSMDGTVRAFDLHRYRNFRTFTSPRPTQFSCVAVDASGEIVSAGAQD 476          
The following BLAST results are available for this feature:
BLAST of CX672346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IPI3_CANAL2.904e-1730.30Pre-rRNA-processing protein IPI3 OS=Candida albica... [more]
IPI3_LODEL7.152e-1629.63Pre-rRNA-processing protein IPI3 OS=Lodderomyces e... [more]
PKWA_THECU1.349e-1428.78Probable serine/threonine-protein kinase pkwA OS=T... [more]
IPI3_ASHGO8.742e-1427.95Pre-rRNA-processing protein IPI3 OS=Ashbya gossypi... [more]
YY46_ANASP1.142e-1328.57Uncharacterized WD repeat-containing protein alr34... [more]
PWP2_SCHPO1.491e-1328.92Periodic tryptophan protein 2 homolog OS=Schizosac... [more]
KTNB1_DANRE1.948e-1325.95Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
IPI3_CANGA3.322e-1330.64Pre-rRNA-processing protein IPI3 OS=Candida glabra... [more]
PWP2_YEAST2.381e-1126.47Periodic tryptophan protein 2 OS=Saccharomyces cer... [more]
PWP2_PONAB2.381e-1125.90Periodic tryptophan protein 2 homolog OS=Pongo abe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D07-H14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672346 ID=CX672346; Name=CX672346; organism=Citrus sinensis; type=EST; length=860bp
CCGTTACAAAAATATATATACGTGATCTTGATCAAGAACTAGCCGGCAAC
CGCACTTCAAATGTGAAAAAAAACAAAACAAACTTGTCAAATCAATCAAA
ATGGAGTTGCTAATCGCATCATCGTCAGTCGCCGATGCCGGTATCGGGTG
CTGGGACCTAGAATCAGGTGCCGAGCAGCTCCGATACAAATCGTGCGCCT
CACCTCCGCACGGACTCGCTTGTGTGGGCCAACGCTTCCTCGCCTCCTCG
CAGCTTCGCGAACAACCTTCCGCCTCGTCCGGTTCCATCCTTTACTGGTC
CTGGTCCAAGCCTCAGGTAGAAGTGAAGAGCTTACCAGCTGAGCCGATTA
AGCCGATTGCTGCTAATAGCCACGGCACCTATATTGCTGGTGGGGGTCAA
TCGGGAGATATCTACATGTGGGAGGTTGCAAGTGGCAGATTATTAAAGAA
GTGGCACGCGCATTATAGGGCCGTTACTTGCTTGGTTTTTTCACAAGACG
GTTCATTTCTGATTTCTGGGTCTGAGGATGGATGTGTTAGAATTTGGTCA
CTTCTAACGGTATTTGAGGAGTGTGAAAGCCAGCGGGCAAGCCATCTGTA
TTTGCATAGTTTTACTGGGCACACTCTGCGTATAACTGATATTGTTATTG
GCTATGGAGGAGTTAGTGCAACTATAGTGTCAGCTTCTGAGGATCGAACT
TGCAAGGTGTGGAGCCTATTGAAGGGAAGATTGTTGAGAAATATTGTATT
CCCTTCAGTAATTGATGCAATTGCATTGGACCCCGCTGAACATGTCTTTT
ATGCCGGCAGTAGAGATGGCAGTATCTATATTGCTGCACTTAATGCTGAA
AGTCCCTCTA
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