CX672343

Overview
NameCX672343
Unique NameCX672343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.061e-30
Identity = 70/187 (37.43%), Postives = 97/187 (51.87%), Query Frame = -2
Query:  268 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 819
            TFL R   K+ PFSS  + EI+  F     S  A I+ + + ECE P   GE K C  S E MIDF+TS LG+ V   +TE   G+K +       G+      ++V CH+  YPY ++YCH+    R Y   L      +      A+CH DTSAW+P H AF  L   PG + +CH++ E+ + W
Sbjct:  434 TFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLLDPKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.420e-29
Identity = 71/187 (37.97%), Postives = 96/187 (51.34%), Query Frame = -2
Query:  268 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 819
            +FL R      PFS+ KL EI   F     S    I+ + + ECE P   GE K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      K+V CH+  YPY ++YCH+    R Y   L   +  K      A+CH DTS+W P H AF  L  KPG + +CH++ E+ + W
Sbjct:  436 SFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADLLELNSKKKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNW 622          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 7.540e-29
Identity = 71/188 (37.77%), Postives = 98/188 (52.13%), Query Frame = -2
Query:  268 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 819
            +FL R      PFS+ K+ EI   F     S    I+ + ++ECE P    E K C  S E MIDF+TS LG+SV   +TE   G+K +       G+      KSV CH+  YPY ++YCH+    R Y   L     +KAK     A+CH DTSAW   H AF +L  +PG + +CH++ E+ + W
Sbjct:  432 SFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGIITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPK-SKAKINHGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNW 618          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.336e-28
Identity = 82/218 (37.61%), Postives = 119/218 (54.59%), Query Frame = -2
Query:  262 PGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGS-VEAEIMQNTIKECEDPG-IKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEVKKGTKM--QTYTIAAGVKQMAADK--SVVCHKQNYPYAVFYCHATQTTRAYMVPLEGAD-------GT--KAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 867
            PG  +  + T  +  A FL R  A S P S+    +I   FS  P S V A+ +Q+ +  CE    IKGE++ CATS+ES+++F+ S LG + ++A S +V     M    Y + A V+ +A  +  +V CH   +P+AVFYCHA   TR Y V LE  +       GT  K +A AVCH DTS ++PK   F    ++PG   +CHF+  D ++W P
Sbjct:  120 PGSIITPYITGIATRAPFLRRDIADSIPVSTKNFADILAMFS--PISLVMADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYKVVA-VRTVAGLRGDTVTCHTMRFPFAVFYCHAINPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIWAP 334          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.089e-27
Identity = 68/188 (36.17%), Postives = 99/188 (52.66%), Query Frame = -2
Query:  268 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 819
            +FL R  A   PFS+ K+ E+   F     S  A+++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K         G+      KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  442 SFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFVALGSGPGKIEVCHWIFENDMTW 628          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27
Identity = 68/188 (36.17%), Postives = 99/188 (52.66%), Query Frame = -2
Query:  268 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 819
            +FL R  A   PFS+ K+ E+   F     S  A+++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE   G+K         G+      KSV CH+  YP  ++YCH+    R Y   +   + +KAK     A+CH DTS+W P+H AF  L   PG + +CH++ E+ + W
Sbjct:  439 SFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYEADILDPN-SKAKINHGVAICHVDTSSWGPRHGAFIALGSGPGKIEVCHWIFENDMTW 625          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.425e-27
Identity = 67/188 (35.64%), Postives = 97/188 (51.60%), Query Frame = -2
Query:  268 TFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAK---AAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 819
            +FL R  A   PFS+ K+ E+   F     S   +++ + + ECE     GE K C  S E MIDF+TS LG++V   +TE  KG+          G+      KSV CH+  YPY ++YCH+    R Y   +   + +K K     A+CH DTS+W P H AF  L   PG + +CH++ E+ + W
Sbjct:  440 SFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYEADILDPN-SKVKINHGVAICHVDTSSWGPSHGAFVALGSGPGKIEVCHWIFENDMTW 626          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.204e-26
Identity = 66/186 (35.48%), Postives = 93/186 (50.00%), Query Frame = -2
Query:  268 FLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTEVKKGTKMQTYT-IAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKA--KAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVW 816
            FL R  AK  PF  + + E+F    V   +   + + +T+ ECE    +GE K CATS E ++DF+   LG  +   ST    G+  Q       GV      +SV CH+  +PY V+YCH+    R Y   +  AD  +      A+CH DTS W+P H AF  L  KPG V +CH++ E  + W
Sbjct:  441 FLPRDIAKKIPFKPNAVSEVFG---VPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYEADIMAADSDQKINHGVAICHLDTSDWSPTHGAFIALGGKPGEVEVCHWIFEGDMTW 623          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: BURPB_ORYSJ (BURP domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=BURP11 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.053e-26
Identity = 82/241 (34.02%), Postives = 116/241 (48.13%), Query Frame = -2
Query:  247 PGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQ--NTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG-KSVQAIS----------TEVKKG----TKMQTYTIAAGVKQMAADKS-----VVCHKQNYPYAVFYCHATQTTRAYMVPL------------EGADGTKAKAAAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVPNKKTG 867
            PG  +      T++   FL R  A + PFS+D+  ++   F+    ++  EI    +T  +     + GE+  CATSLES+ D + S LG + V+A S          T  ++G    T ++  +  AG    ++ +      V CH   YPYAVFYCH+T+ T AY V L            E A   K +A AVCH DTS W   +  F    VKPG V +CHFL +  IVWVP  + G
Sbjct:   82 PGSVITPTIPPTTSLPAFLPRHVADAIPFSADRFADVLAMFAPASLAMAREIRWALDTCGQRAAALLPGEKAGCATSLESLADLAASLLGTRDVRAFSAADLPTDAATTPARRGRYNVTSVRELSAMAGSGSSSSSEPAPAAVVACHDLTYPYAVFYCHSTKPTAAYAVTLVAATTGDGDGEGEAASPAKMEALAVCHLDTSRWRADNPFFVAHGVKPGEVSVCHFLTKLSIVWVPRHEQG 322          
BLAST of CX672343 vs. ExPASy Swiss-Prot
Match: BURP9_ORYSJ (BURP domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=BURP9 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.502e-26
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = -2
Query:  262 PGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPG-IKGEQKYCATSLESMIDFSTSKLG-KSVQAISTEVK-KGTKMQTYTIAAGVKQMAADKSVVCHKQNYPYAVFYCHATQTTRAYMVPLEGADGTKAKA---AAVCHTDTSAWNPKHLAFQVLKVKPGTVPICHFLPEDHIVWVP 867
            PG  +          + FL R  +K  PFS   + +I   FS    ++ A+ +  T++ CE  G + GE+  CATS+ES++D   S LG K V+A++     +G     Y +A+      +   + CH   YPY VF+CH  + TR Y V L   +  +       AVCH +TS W+  H  F  + VKPG    CHF     I+WVP
Sbjct:  300 PGSVLITRILSARQSSIFLHRNNSKHIPFSMKNITDILTMFSPVSATM-ADGIAATLQACEHTGMVHGEKAKCATSIESLLDVVVSSLGTKLVRALTPGAPMEGVPSLRYIVASATPVPNSQSMLACHDMLYPYKVFFCHTPKQTRLYQVSLVSGESGRPLIDGLLAVCHQNTSDWDTGHPFFHFMDVKPGETTACHFFGRGSIIWVP 506          
The following BLAST results are available for this feature:
BLAST of CX672343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
Y639_ARATH3.061e-3037.43Probable polygalacturonase non-catalytic subunit A... [more]
JP650_ARATH4.420e-2937.97Probable polygalacturonase non-catalytic subunit J... [more]
JP630_ARATH7.540e-2937.77Probable polygalacturonase non-catalytic subunit J... [more]
BURPA_ORYSJ8.336e-2837.61BURP domain-containing protein 10 OS=Oryza sativa ... [more]
GP3_SOLLC1.089e-2736.17Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC1.422e-2736.17Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP1_SOLLC2.425e-2735.64Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
BURPC_ORYSJ1.204e-2635.48BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPB_ORYSJ2.053e-2634.02BURP domain-containing protein 11 OS=Oryza sativa ... [more]
BURP9_ORYSJ3.502e-2633.17BURP domain-containing protein 9 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D06-H12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672343 ID=CX672343; Name=CX672343; organism=Citrus sinensis; type=EST; length=871bp
GATCACAGGGATTTCTAATAGATTCACCAGCCAGCCGCAAAGTAAGACTG
TGAAGATAGCTCCATAAGTAGATAAGATAAATACTAGGCACACAAGTTTT
GAAGTACAGCAAGCTTAATGTATGCATAACAAATTGAACTGGGTATTCAA
AGTAAATTATTGTACAACTAAATGGATAACTGCTTGAACTGACTGATTCA
AACTCTGCTGATTAAGTAGATGGGATAAGAGGATCAAATTCTATTCTCCA
GTCTTCTTATTGGGAACCCAGACAATGTGATCCTCAGGAAGGAAGTGACA
TATAGGAACAGTTCCTGGCTTAACTTTGAGCACTTGAAAAGCTAAATGCT
TGGGGTTCCATGCTGATGTATCTGTGTGGCAGACTGCTGCTGCTTTGGCT
TTTGTCCCATCAGCACCTTCCAAGGGAACCATGTAAGCCCTTGTGGTTTG
TGTTGCATGGCAGTAGAATACAGCATATGGATAGTTCTGCTTATGGCACA
CTACTGATTTGTCAGCTGCCATCTGCTTCACTCCAGCTGCGATTGTATAT
GTCTGCATCTTGGTTCCTTTTTTTACCTCCGTAGAAATTGCCTGAACACT
CTTTCCAAGCTTAGAAGTGCTGAAGTCAATCATTGACTCCAGTGAAGTTG
CACAATATTTCTGCTCTCCTTTAATGCCAGGGTCTTCACACTCTTTGATT
GTGTTCTGCATTATTTCAGCTTCAACTGATCCAGGTTTCACGGAAAACTG
GTTAAAGATCTCAGGCAATTTGTCAGACGAGAAAGGAGTTGATTTGGCAG
CTTGGCGAGATAAGAAAGTTGCTCCATTTGAAGTTTGAGTGAAGTGCAAG
TTCATCTTCATGCCAGGATGC
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