CX672341

Overview
NameCX672341
Unique NameCX672341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672341 vs. ExPASy Swiss-Prot
Match: ERD2_KLULA (ER lumen protein retaining receptor OS=Kluyveromyces lactis GN=ERD2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.140e-38
Identity = 56/149 (37.58%), Postives = 89/149 (59.73%), Query Frame = -1
Query:  221 IYSQILSLYNTVMKLIFLGSSFSIVWYMRHHSIVRRSYNKD---QDTFRRFFXXXXXXXXXXLINENFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYRYFTEPHYVHWIPWISGLVQTLLYAD 658
            ++++  SLYN +MK++F+ SS  ++  MR          +D   +D F+  F          + N  F+F ++ W+FSL+LE+VAILPQL +L +T     LT  Y+F LG YR LYI NW++RY+TE  +   +   +G++QTL+Y+D
Sbjct:   52 LFTKWTSLYNFLMKIVFISSSVYVIVLMRQQKFKNPVAYQDMITRDQFKIKFLIVPCILLGLIFNYRFSFIQICWSFSLWLESVAILPQLFMLTKTGKAKQLTSHYIFALGLYRALYIPNWIWRYYTEERF-DKLSVFTGVIQTLVYSD 199          

HSP 2 Score: 70.8626 bits (172), Expect = 4.140e-38
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = -3
Query:  633 NIFRLAGDMTHLASVLVLLLKIHTIKSCSGVSLKTQELYALVFTTRYLDIFTDFVSV 803
            N+FR+AGD +HLAS+++L+  I T  S  G+SLKTQ LY LVF TRYL++FT + S+
Sbjct:    3 NVFRIAGDFSHLASIIILIQSITTSNSVDGISLKTQLLYTLVFITRYLNLFTKWTSL 59          
BLAST of CX672341 vs. ExPASy Swiss-Prot
Match: ERD2_YEAST (ER lumen protein retaining receptor OS=Saccharomyces cerevisiae GN=ERD2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-34
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = -1
Query:  167 LSLYNTVMKLIFLGSSFSIVWYMRHHSIVRR-SYNKD--QDTFRRFFXXXXXXXXXXLINENFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYRYFTEPHYVHWIPWISGLVQTLLYADXXXXXFDSWKNNKNLQLP 643
            +SLYN +MK+ F+ S+  IV  ++        +YN+    DTF+               +  FTF E+ W+FS++LE+VAILPQL +L +     +LT  Y+F +G YR LYI NW++RY TE   +  I + +GL+QTLLY+D     +      K  +LP
Sbjct:   57 VSLYNALMKIFFIVSTAYIVVLLQGSKRTNTIAYNEMLMHDTFKIQHLLIGSALMSVFFHHKFTFLELAWSFSVWLESVAILPQLYMLSKGGKTRSLTVHYIFAMGLYRALYIPNWIWRYSTEDKKLDKIAFFAGLLQTLLYSDFFYIYYTKVIRGKGFKLP 218          

HSP 2 Score: 63.929 bits (154), Expect = 2.550e-34
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = -3
Query:  648 NIFRLAGDMTHLASVLVLLLKIHTIKSCSGVSLKTQELYALVFTTRYLDIFT 803
            N FR+ GD++HL S+L+L+  I T +   G+S KTQ LYALVF TRYLD+ T
Sbjct:    2 NPFRILGDLSHLTSILILIHNIKTTRYIEGISFKTQTLYALVFITRYLDLLT 53          
BLAST of CX672341 vs. ExPASy Swiss-Prot
Match: ERD2_SCHPO (ER lumen protein retaining receptor OS=Schizosaccharomyces pombe GN=erd2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 57/166 (34.34%), Postives = 92/166 (55.42%), Query Frame = -1
Query:  164 WIYSQILSLYNTVMKLIFLGSSFSIVWYMRHHSIVRRSYNKDQDTFRRFFXXXXXXXXXXLINENFTFKEVMWTFSLYLEAVAILPQLVLLQRTRNIDNLTGQYVFFLGAYRGLYILNWVYRYFTEPHYVHWIPWISGLVQTLLYADXXXXXFDSWKNNKNLQLPA 661
            W Y    SLY  +M+++F+ S   I + M     +R +Y+K  DTFR  +          +   ++T   ++WTFS++LE+VAILPQL +LQR+   ++LT  Y+F +  YRGLYI +W+YR       +  +  ++G++QT+LY D       +    K  +LPA
Sbjct:   53 WRYK---SLYYFLMRIVFIASESYICYLML--MTLRPTYDKRLDTFRTEYILGGCAVLALIYPTSYTISNILWTFSIWLESVAILPQLFMLQRSGETESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVI-GVAILAGIIQTVLYGDFAVVYRRTVLQGKKFRLPA 212          
The following BLAST results are available for this feature:
BLAST of CX672341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ERD2_KLULA4.140e-3837.58ER lumen protein retaining receptor OS=Kluyveromyc... [more]
ERD2_YEAST2.550e-3437.04ER lumen protein retaining receptor OS=Saccharomyc... [more]
ERD2_SCHPO1.756e-2134.34ER lumen protein retaining receptor OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16D05_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16D05-H10-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672341 ID=CX672341; Name=CX672341; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTCATATTAAACAGAAACGTTTTGTGTTGTATAAATGGTGTACA
AGGAATTAAGGAACACAAGAATTTAGCAGTCGAAGTATTAGAATGAACAT
TATCCGCAAATGCTGCTTGTGATAGATACTCTGGCAGTAGGTATACGAGG
GTGAGCATACTTAAGCCGGTAACTGAAGGTTCTTGTTGTTTTTCCAGCTG
TCGAAATAATAATAGAAGAAGTCGGCATATAGCAATGTTTGAACAAGCCC
TGAAATCCAAGGTATCCAATGCACATAGTGCGGCTCGGTGAAGTAGCGGT
AAACCCAGTTTAGGATGTATAATCCTCTATAAGCACCAAGAAAGAATACA
TATTGGCCTGTCAAATTGTCGATGTTTCTAGTCCTTTGCAAGAGTACAAG
CTGAGGAAGTATTGCAACGGCTTCTAAATACAGCGAAAATGTCCACATTA
CCTCCTTGAAGGTGAAATTTTCATTAATAAGAAGAGCCAAAAGTAAGCAA
GGCAAAACAAGGAAGAAACGGCGAAAGGTGTCCTGGTCTTTATTGTAAGA
CCTTCTCACAATGCTATGATGCCTCATGTACCAAACAATTGAAAACGAAC
TACCCAAGAATATAAGCTTCATTACTGTATTATACAGAGACAAAATCTGT
GAATATATCCAAGTATCGGGTGGTGAAAACCAGAGCGTAGAGCTCTTGAG
TCTTCAATGAAACGCCAGAGCAAGATTTAATGGTGTGGATCTTGAGGAGC
AAGACGAGAACGCTAGCTAAGTGGGTCATGTCACCCGCTAATCTGAAAAT
GTTCA
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