CX672323

Overview
NameCX672323
Unique NameCX672323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672323 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.444e-21
Identity = 55/182 (30.22%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   27 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL--LPRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA 566
            K A+ WE  +P  ++++E+  P+  EV+I+++   +CR+D +     G  P+   P + GH                    HV+  F   CG C  C++ + N+CDL     + G  + DG  R    G+ V       TFS Y VVH   V KI+P  P +  C++ CGV+TG G+ +  A
Sbjct:    4 KGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHL--VTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDL-GAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTA 182          
BLAST of CX672323 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.444e-21
Identity = 55/182 (30.22%), Postives = 87/182 (47.80%), Query Frame = 3
Query:   27 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPL--LPRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVA 566
            K A+ WE  +P  ++++E+  P+  EV+I+++   +CR+D +     G  P+   P + GH                    HV+  F   CG C  C++ + N+CDL     + G  + DG  R    G+ V       TFS Y VVH   V KI+P  P +  C++ CGV+TG G+ +  A
Sbjct:    4 KGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHL--VTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDL-GAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTA 182          
BLAST of CX672323 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.886e-16
Identity = 66/266 (24.81%), Postives = 101/266 (37.97%), Query Frame = 3
Query:   21 TCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLLPRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRSDVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFDEAKKFGVTDFVNTSEHDRPIQEVIAEMTNG-GVDRSVECTG 815
            T +  +A   G P+ + D+ +  P   EV   I   ++C TDL + E  G     P + GH                    +V+  +   CG CR C+      C     N  + + L DG          +   LG   F++ T+VH+G   K++P A      +L CGV  GLGA +N     R                              VDR +K+ + A + G T  VN +E D  + E +  +T G G D  ++  G
Sbjct:    3 TVRGVIARSKGAPVELTDIVIPDPGPSEVTALIATCAVCHTDLTYREG-GINDEFPFLLGHEAAGTVESVGEGVDSVQPGDYVVLNWRAVCGQCRACKRGRPQYC-FSTFNATQKMTLTDGTE--------LTPALGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVG 256          
BLAST of CX672323 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.588e-12
Identity = 64/264 (24.24%), Postives = 100/264 (37.88%), Query Frame = 3
Query:   27 KAAVAWEAGKPLIIQDVEVAPPQAMEVRIKIKYTSLCRTDLYFWESKGQTPLLPRIFGHXXXXXXXXXXXXXXXXXXXXHVLPVFTGECGDCRHCRS-DVSNMCDLLRINPVRGVMLADGQSRFSINGEPVNHFLGTSTFSEYTVVHSGCVAKINPLAPLDKVCILSCGVSTGLGATLNVAKPERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRSSKRFDEAKKFGVTDFVNTSEHDRPIQEVIAEMTNGGVDRSVECTG 815
            KAA+  +   P +++ V +  P   +V +++  T LC TDL   +     PL P +FGH                    HV+  F   CG C  C S D ++  +    N +   +  +         E    F G S+F+ Y + +     K+    PL+ +  L CG+ TG G+ LN   P                                VD    R + A + G T  +N + +D PI E I E+   GV   +E +G
Sbjct:    4 KAAIVRQKNGPFLLEHVALNEPAEDQVLVRLVATGLCHTDLVCRDQHYPVPL-PMVFGHEGAGVVERVGSAVKKVQPGDHVVLTFY-TCGSCDACLSGDPTSCANSFGPNFMGRSVTGECTIHDHQGAEVGASFFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGSVLNALNPPAGSAIAIFGAGAVGLSAVMAAVVAGCTTIIAVDVKENRLELASELGATHIINPAAND-PI-EAIKEIFADGVPYVLETSG 263          
The following BLAST results are available for this feature:
BLAST of CX672323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
ADHB_MYCTU5.444e-2130.22Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO5.444e-2130.22Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
FADH_AMYME6.886e-1624.81NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
XYLB_PSEPU1.588e-1224.24Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_16C06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-16C06-F12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672323 ID=CX672323; Name=CX672323; organism=Citrus sinensis; type=EST; length=838bp
GCACTGCTGGTCTTATTCTTACCTGCAAAGCGGCGGTTGCTTGGGAAGCA
GGGAAGCCGCTGATCATTCAGGATGTGGAGGTTGCTCCTCCACAGGCCAT
GGAAGTGAGGATCAAGATCAAATACACCTCTCTTTGCCGCACTGATCTCT
ATTTCTGGGAGTCCAAGGGTCAGACACCCTTGCTTCCTCGCATATTTGGG
CATGAAGCAGCAGGGGTTGTGGAAAGTGTTGGGGAAGGTGTTTCAGACCT
TGAAGTAGGGGATCACGTACTCCCGGTATTTACAGGGGAGTGTGGGGATT
GTAGACACTGCAGGTCGGATGTAAGCAATATGTGTGACCTTTTGAGAATA
AACCCAGTCAGGGGAGTCATGCTTGCTGATGGACAATCTAGGTTTTCCAT
CAATGGGGAGCCTGTAAATCACTTCCTTGGAACATCCACCTTTAGCGAGT
ACACTGTCGTTCATTCAGGCTGCGTTGCAAAGATCAATCCTCTGGCACCT
TTGGACAAAGTCTGCATTCTCAGTTGTGGCGTCTCAACAGGGCTAGGTGC
AACTCTAAATGTGGCAAAACCTGAAAGGGGTTCGTCAGTCGCTGTCTTTG
GCCTCGGAGCTGTTGGTTTAGCAGCTGCAGAAGGTGCAAGAATTGCTGGA
GCATCAAGAATTATTGGTGTTGATAGGAGCTCCAAGAGGTTTGACGAAGC
CAAAAAGTTTGGAGTAACTGATTTTGTCAACACCAGTGAGCATGACAGAC
CAATTCAAGAGGTAATTGCAGAGATGACGAACGGTGGAGTTGACAGAAGT
GTGGAGTGCACCGGCAACATTGATAACATGATCTCAGC
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