EY664735

Overview
NameEY664735
Unique NameEY664735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664735 vs. ExPASy Swiss-Prot
Match: SUMO1_DANRE (Small ubiquitin-related modifier 1 OS=Danio rerio GN=sumo1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:  155 TNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 433
            T T    D        +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+    TP EL MED D I+    QTGG
Sbjct:    4 TETKPSSDGGEKKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVPVNSLRFLFEGQRITDNLTPKELGMEDEDVIEVYQEQTGG 96
[Close]
BLAST of EY664735 vs. ExPASy Swiss-Prot
Match: SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.709e-16
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 2 
Query:  146 SGVTNTPQEEDKKPNDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 433
            S V    + E K       HINLKV   DG+ E+FF+IK++T L++LM A+  RQ  E++S+ FL+DG R++ +QTP++L+MED D I+A   Q GG
Sbjct:    4 SEVNQEAKPEVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98
The following BLAST results are available for this feature:
BLAST of EY664735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_DANRE5.106e-1645.16Small ubiquitin-related modifier 1 OS=Danio rerio ... [more]
SMT3_YEAST8.709e-1645.36Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-069-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664735 ID=EY664735; Name=EY664735; organism=Citrus sinensis; type=EST; length=607bp
CCCTACTGGTNACGCCTGCCCAGTATCGGTNCCGGNATTCCCGGGCTCGA
CCCACCGTCCGAGAGATCGATTGAGCAAGAGATAGAGAGAAAGATAAAGA
GAGAGAGAGAGAGAGAGAGAGAGAGACGAAGCAGAAGAGAGAATGTCAGG
CGTCACGAACACTCCGCAAGAGGAAGATAAGAAGCCCAACGATCAATCGG
CTCACATCAATCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCTTC
AGGATCAAACGAAGCACCCAACTAAAGAAGCTTATGAATGCATACTGTGA
TAGACAATCTGTGGAGCTGAACTCAATTGCCTTCTTGTTTGATGGCCGCC
GTCTTCGAGGAGAGCAAACCCCTGATGAGCTGGAAATGGAAGATGGTGAT
GAGATTGATGCCATGCTGCACCAAACCGGAGGAATGCTGATGTTCTAATT
ATGTAATGCTCGTTTGAGAGCTTATTAGTAGTATTAATGTAAAACTATTT
ATGGATGGATGTAAGTTATGCAGAGGCTCAAGATTGTGTATTTGTGATCT
ACACCATTATGTTTGGATTACCTAAGTATGTAGCTCTTTCTTCAAAAAAA
AAAAAAA
back to top