EG358365

Overview
NameEG358365
Unique NameEG358365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358365 vs. ExPASy Swiss-Prot
Match: YHIT_HELPY (Uncharacterized HIT-like protein HP_0404 OS=Helicobacter pylori GN=HP_0404 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   87 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLL-YTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 395
            +F+KII  EIP   + E+++ L+F DI P+A  H L+IPK       G++       E++ ++  +  ++V K    E G++++ N G N GQ V H+H H+L G
Sbjct:    3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITP------ELMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101          
BLAST of EG358365 vs. ExPASy Swiss-Prot
Match: YHIT_HELPJ (Uncharacterized HIT-like protein jhp_0977 OS=Helicobacter pylori J99 GN=jhp_0977 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   87 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKVK-DGLTGLSKAEERHCEILGRLL-YTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLLGG 395
            +F+KII  EIP   + E+++ L+F DI P+A  H L+IPK       G++       E++ ++  +  ++V K    E G++++ N G N GQ V H+H H+L G
Sbjct:    3 VFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITP------ELMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSG 101          
BLAST of EG358365 vs. ExPASy Swiss-Prot
Match: YHIT_BORBU (Uncharacterized HIT-like protein BB_0379 OS=Borrelia burgdorferi GN=BB_0379 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 42/103 (40.78%), Postives = 54/103 (52.43%), Query Frame = 3
Query:   87 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPKV-KDGLTGL-SKAEERHCEILGRLLYTAKLVAKQEGLEDGFRIVINDGPNGGQSVFHIHVHLL 389
            IF KIINKE+PS  VYEDD VLAF DI P    H L+IPK   + L  +  K  ER  ++  ++    K +     +  G  I    G   GQ VFH H H++
Sbjct:    5 IFCKIINKELPSYKVYEDDLVLAFLDINPLTVGHTLVIPKEHSESLLNMDDKFNERVLKVCKKISNALKRI--NSSIYGGINIYSALGAGAGQEVFHTHFHVI 105          
BLAST of EG358365 vs. ExPASy Swiss-Prot
Match: YHIT_MYCHR (Uncharacterized 13.1 kDa HIT-like protein in P37 5'region OS=Mycoplasma hyorhinis PE=4 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 3
Query:   87 IFDKIINKEIPSKVVYEDDKVLAFRDIEPQAPTHILIIPK-VKDGLTGLSKAEERHCEILGRLLYTAKLVAKQEGLE---DGFRIVINDGPNGGQSVFHIHVHLL 389
            +F KII +E P+ ++YEDDKV+AF D       H L++PK     L  +S       E L  L+  A+  A QE  +    GF+++IN+ P+  QS+FH HVH++
Sbjct:    8 LFLKIIKREEPATILYEDDKVIAFLDKYAHTKGHFLVVPKNYSRNLFSISD------EDLSYLIVKAREFALQEIKKLGATGFKLLINNEPDAEQSIFHTHVHII 106          
The following BLAST results are available for this feature:
BLAST of EG358365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
YHIT_HELPY2.818e-1134.29Uncharacterized HIT-like protein HP_0404 OS=Helico... [more]
YHIT_HELPJ2.818e-1134.29Uncharacterized HIT-like protein jhp_0977 OS=Helic... [more]
YHIT_BORBU4.806e-1140.78Uncharacterized HIT-like protein BB_0379 OS=Borrel... [more]
YHIT_MYCHR8.198e-1138.10Uncharacterized 13.1 kDa HIT-like protein in P37 5... [more]

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Properties
Property NameValue
Genbank description5c5 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0005c5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358365 ID=EG358365; Name=EG358365; organism=Citrus sinensis; type=EST; length=476bp
ACGCGGGGACGTATCATTTGTCTGCCGTCGTCATGGCTTCAGAGAAAGAG
GCTGCTGCTGCAGCCGTTCCTTCTGATTCGCCCACCATATTTGACAAAAT
AATTAACAAAGAAATCCCATCTAAAGTTGTTTATGAGGATGATAAGGTCT
TAGCCTTTAGGGACATAGAGCCCCAAGCTCCTACACACATTCTAATTATT
CCCAAAGTGAAGGATGGCTTGACTGGACTTTCAAAGGCTGAGGAAAGGCA
TTGCGAAATTCTTGGCCGCCTTCTTTACACTGCTAAGCTTGTTGCTAAAC
AGGAAGGACTAGAAGACGGCTTTAGGATTGTGATTAATGATGGGCCAAAT
GGAGGTCAATCAGTTTTTCACATCCACGTCCACCTCCTAGGAGGACGACA
AATGAACTGGCCCCCGGGCTAAGATGAAGTATTTTGGGTGCCAGATTCTC
TTATGAAAAAATGATTACGCCCTTTG
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