EY664716

Overview
NameEY664716
Unique NameEY664716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 98.9821 bits (245), Expect = 4.009e-20
Identity = 68/219 (31.05%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   48 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTK 698
            PR GSLGF PRKR++    +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IETPP+          TP G R L  VW    + E+ R                     + D  ++ I+   E        +R++ HT    +  + +KK  +ME +V GGSV+ ++D A    E   +  ++ +F+  E  D+ GVTK
Sbjct:    7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-------------DVPEDHDPDAAEEQIRDAHEAGD--LGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTK 208          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 6.839e-20
Identity = 69/220 (31.36%), Postives = 97/220 (44.09%), Query Frame = 3
Query:   48 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTK 698
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ETPP+          TP G + L  VWA   +E + R                        D   D    +E +  +    IRV+ HT      G+ +K   +ME +V GG++A +++FA    E         VF+  E  D  G+TK
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITK 205          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.839e-20
Identity = 69/220 (31.36%), Postives = 97/220 (44.09%), Query Frame = 3
Query:   48 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEK--QIPIDAVFQKDEMIDIIGVTK 698
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ETPP+          TP G + L  VWA   +E + R                        D   D    +E +  +    IRV+ HT      G+ +K   +ME +V GG++A +++FA    E         VF+  E  D  G+TK
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITK 205          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.923e-20
Identity = 59/218 (27.06%), Postives = 95/218 (43.58%), Query Frame = 3
Query:   48 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV--IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVT 695
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIETP +         +   G +++  VWA  L+ E++RR                       D   +    + KM +   V  IR + +T  + + G+ +K   +ME  ++   +  K ++A       + I  VF+   +ID   +T
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-----------------PVPKGDNMAETLGNIGKMIEEGKVSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAIT 205          

HSP 2 Score: 35.039 bits (79), Expect = 7.923e-20
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 2
Query:  809 RVSFTVARAGQNGYHHRTEMNKKFTSLES 895
            RVS+ V + GQ GYH RTE NK+   + S
Sbjct:  245 RVSWRVPQMGQTGYHQRTEFNKRILKIGS 273          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.932e-20
Identity = 70/222 (31.53%), Postives = 101/222 (45.50%), Query Frame = 3
Query:   36 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY--KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVT 695
            K   PR GSL F PRKRA     K K++P+   +    L  F GYK GMTH++   +   S    KE    VTIIE P +         K   G  +L  +WA+ L+ ++ RR    KN+               ++   KK     L         I  LA+TQ   M G+ +K   LMEI+V GG +A++ ++A+G   K+I +  V +     DI  +T
Sbjct:    3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRRVTSPKNY---------------DSTAAKKKYSDAL--AAGLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAIT 205          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.948e-19
Identity = 53/216 (24.54%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   48 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVT 695
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++   WA  L+ E++RR                       +G ++I   +E+ +   + IR + +T  + + G+ +K   +ME  ++   +  K ++A       + +  VF+   ++D   +T
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVDTAAIT 205          

HSP 2 Score: 35.8094 bits (81), Expect = 2.948e-19
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  788 LXAWXSARVSFTVARAGQNGYHHRTEMNKKFTSLES 895
            L ++  +RVS+ V + GQ GYH RTE NK+   + S
Sbjct:  238 LGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGS 273          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.432e-19
Identity = 62/216 (28.70%), Postives = 94/216 (43.52%), Query Frame = 3
Query:   48 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVT 695
            PR GSL + PRKRA     K  ++P  D  +P  L +F GYK GMTH++   +   S    K+    VTIIE PP+             G R+L  VW + L+  + RR                      + G K +   +       T +  L +TQ   + G+ +K   LME+ + GG++ QKV+FA      ++ +  V    E  D+  +T
Sbjct:    7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTEGKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI-------------TLPKKYSEEAGFKALSEAV--AAGTVTELHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKVEFAQSIIGNEVNLADVIGAGEYADVTAIT 205          

HSP 2 Score: 28.8758 bits (63), Expect = 8.432e-19
Identity = 12/34 (35.29%), Postives = 17/34 (50.00%), Query Frame = 2
Query:  788 LXAWXSARVSFTVARAGQNGYHHRTEMNKKFTSL 889
            L  W    V + V + GQ GY  RT+ NK+   +
Sbjct:  238 LGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKI 271          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.432e-19
Identity = 57/220 (25.91%), Postives = 100/220 (45.45%), Query Frame = 3
Query:   36 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVT 695
            K   PR GSL + PRKRA     +  ++P+   +   +   F GYK GMTH++   +   S    K+    VT++E PP+         +   G  +L   W   L+EE+ RR                    +T    + ++A + + K   + +  LA+T+  ++ G+ +K   LME+++ GGS+  ++ +A     K+I I    +  E +D+  VT
Sbjct:    3 KINRPRRGSLAYSPRKRAKSPVPRYGSWPEYTGAPAVQ--GFAGYKVGMTHVIMVDDHKSSPTEGKDVMVPVTVVEVPPMRVAGVRAYGEDTYGKHALTEAWTTDLDEELSRRI-------------NVPKNHDTAAALEAVKAAVGEGK--VSELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVT 205          

HSP 2 Score: 30.0314 bits (66), Expect = 8.432e-19
Identity = 13/34 (38.24%), Postives = 17/34 (50.00%), Query Frame = 2
Query:  788 LXAWXSARVSFTVARAGQNGYHHRTEMNKKFTSL 889
            L  W    V + V + GQ GY  RTE NK+   +
Sbjct:  238 LGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKI 271          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.011e-18
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 2
Query:  776 RVLVLXAWXSARVSFTVARAGQNGYHHRTEMNKK 877
            +V  + AW  AR +F+VARAGQ GYHHRTE+NKK
Sbjct:   47 KVACIGAWHPARXAFSVARAGQKGYHHRTEINKK 80          

HSP 2 Score: 48.9062 bits (115), Expect = 1.011e-18
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  697 KGRDMXGVVTRWGVTRLPRKTHRGLRKGACIG 792
            KG+   GV +RW   +LPRKTHRGLRK ACIG
Sbjct:   21 KGKGYKGVTSRWHTKKLPRKTHRGLRKVACIG 52          

HSP 3 Score: 33.8834 bits (76), Expect = 1.011e-18
Identity = 13/21 (61.90%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  636 QIPIDAVFQKDEMIDIIGVTK 698
            ++P++ VF +DEMID+IGVTK
Sbjct:    1 RVPVNQVFGQDEMIDVIGVTK 21          
BLAST of EY664716 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 51/216 (23.61%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   48 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAYGFFEKQIPIDAVFQKDEMIDIIGVT 695
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++  VWA  L+ E++RR                       +  ++I   +E+ +   + +R + +T  + + G+ +K   +ME  ++   +  K +++       + +  VF+   ++D   +T
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAIT 205          
The following BLAST results are available for this feature:
BLAST of EY664716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
RL3_HALMA4.009e-2031.0550S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_HALSA6.839e-2031.3650S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS36.839e-2031.3650S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_METBF7.923e-2027.0650S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_METB68.932e-2031.5350S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_METMA2.948e-1924.5450S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METPE8.432e-1928.7050S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_METMJ8.432e-1925.9150S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_PIG1.011e-1864.7160S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]
RL3_METAC7.324e-1423.6150S ribosomal protein L3P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-069-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664716 ID=EY664716; Name=EY664716; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGTGCCGATTAGGATGTCTCATCGTAAGTTTGAACACCCA
AGACATGGTTCTTTAGGATTTCTTCCAAGGAAGAGAGCATCCCGCCACAG
AGGAAAAGTGAAGGCCTTTCCCAAGGATGACCCATCAAAACCATGCAGAT
TAACTGCTTTTTTAGGCTACAAAGCTGGAATGACCCATATTGTCAGAGAT
GTTGAAAAGCCAGGATCAAAGCTGCACAAGAAAGAAACATGTGAAGCAGT
AACTATTATTGAAACACCACCCCTGGTGGTTGTTGGGGTCGTTGGTTATG
TCAAGACGCCCCGTGGGCTTCGTTCTCTCTGCACTGTTTGGGCTCAGCAT
CTCAATGAGGAGGTTAGGAGAAGGTTTTACAAGAACTGGTGCAAATCGAA
GAAGAAGGCCTTCACTAAGTATACAAAGAAGTATGAAACTGATGATGGAA
AGAAAGACATTCAGGCTCAGCTGGAGAAAATGAAGAAATACTGCACCGTG
ATTCGTGTTTTGGCCCATACCCAGATCAGAAAAATGAAGGGACTGAAGCA
GAAGAAGGCCCATCTGATGGAGATCCAGGTCAATGGTGGATCAGTTGCCC
AGAAGGTTGACTTTGCTTATGGTTTCTTCGAGAAACAGATTCCTATTGAT
GCTGTGTTCCAGAAAGATGAGATGATTGACATTATTGGTGTGACCAAAGG
GTAGGGATATGANGGGTGTTGTTACTCGTTGGGGTGTTACTCGTCTCCCT
CGTAAGACTCACCGTGGTCTACGCAAGGGTGCTTGTATTGGNTGCCTGGN
CATCCGCTAGGGTCTCCTTTACTGTTGCTAGAGCTGGGCAGAACGGCTAC
CATCACCGTACAGAGATGAACAAGAAATTTACAAGCTTGGAAAGCCACCC
AAGATTCT
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