EY664715

Overview
NameEY664715
Unique NameEY664715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7601 contig Csv1_Contig7601:620..1382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664715 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.000e-25
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1
Query:    1 REHRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQA-LTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECL 456
            RE R NLWFDP  D+H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   +++  AP+ + + D  + GC V       S      +     + +T  +  +    R  HM Y YC D  RY V   EC+
Sbjct:  138 REERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291          
BLAST of EY664715 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.236e-21
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 1
Query:    1 REHRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 453
            ++ R  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:  124 KDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
The following BLAST results are available for this feature:
BLAST of EY664715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH28_ARATH7.000e-2538.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.236e-2137.25Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-069-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664715 ID=EY664715; Name=EY664715; organism=Citrus sinensis; type=EST; length=764bp
AGAGAACATAGAGTGAACCTCTGGTTTGACCCTGCTGCAGATTATCACCT
TTACACTATTCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGATG
TGCCCATCAGGGTTTACAAAAACAGTGGAAGGGCTCCATTTCCAATGAAC
CAACCCATGGGGGTGTATTCAACGCTGTGGGAAGCAGATGACTGGGCAAC
AAGAGGTGGTCTAGAGAAAATAGATTGGAGCAAAGCTCCTTTTTATGCTT
ATTACAGAGACTTTGATATTGAGGGCTGCCCAGTTCCTGGACCAGCAAAC
TGTGCCTCGAACCCAGGTAACTGGTGGGAGGCAAATAATTATCAAGCCCT
CACCGCCATGGAAGCAAGAAGATACAGATGGGTTCGTCTCAACCACATGA
TCTATGATTATTGCACTGATAAATCAAGATACCCAGTACCCCCACCGGAA
TGCCTTGCCGGCATATAAATTCAACCCGCCAATTAATTAAGCAGTTGGAC
GGTACTCCATATCCGTATCATATCATGTATATTACTTCACGTACACGTCC
TTTGTATTATTCCCTATTCGTGTGAAAAGACTTATACGCATATCAAGGGA
GGGGCGGGAGGGGAAATAAACATTGTGTGCATTTAAATGTAATTATGGGA
GTGGGAAATATGTGGGGTTTTCTGCTCTGCTTGTACCATATATAAGTCTG
AATTTGATGCACAGTATTCTGTGCCAATAAAAGCTTCTTCATAAAAAAAA
AAAAAAAAAAAAAA
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