CX043648

Overview
NameCX043648
Unique NameCX043648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.069e-24
Identity = 61/131 (46.56%), Postives = 74/131 (56.49%), Query Frame = -3
Query:  329 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGY 718
            A+G  P L V GTDY T DGT +RDYI V DL D H+ AL K    K+G  +YN+GTG G SV E V A + A+G  I +    RRPGD   VY+   K   ELNW A+Y  + E     W W   +P GY
Sbjct:  260 ALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVG--IYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYIDLRESLSTAWKWQKAHPNGY 388          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.069e-24
Identity = 61/131 (46.56%), Postives = 76/131 (58.02%), Query Frame = -3
Query:  329 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGY 718
            A G  P L + GTDY T DGT VRDYI V DL D H+ AL K    K+G  +YN+GTGKG+SV E V A +KA+G +I +    RR GD   VY+   K  +ELNW AK+  + E     W W   +  GY
Sbjct:  281 ARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQKAKPRKVG--IYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGY 409          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 62/152 (40.79%), Postives = 86/152 (56.58%), Query Frame = -3
Query:  326 IGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAAL-HKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYE 775
            IGED      +L+P + + A+    + T+FG DY TKDGT VRDY+ V DL D HI AL H +   K   +V+NLGT  G S LE++ + +K +G  IP     RR GD + + A + KA   L WK K+  +D++    W W   +P GYE
Sbjct:  180 IGED-HAPETHLIPNILKSAISGDGKFTIFGDDYDTKDGTNVRDYVQVEDLIDAHILALKHMMKTNK--SDVFNLGTAHGYSNLEILESAKKVTGIDIPYTMGPRRGGDPDSLVADSTKARTVLGWKPKHENVDDVIATAWKWHKSHPKGYE 328          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = -3
Query:  332 MPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCE--VYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYG 739
            +P     A+GRR    VFGTDY T+DGT VRDYIHV+DLAD H+ A+  L +   G E    NLGTG GT+V E++ A EK + +   +  + RR GD+  + A+  KA + L W+ +Y +  +    WNW S+   G
Sbjct:  193 IPLAIDAALGRREGFKVFGTDYDTRDGTCVRDYIHVLDLADAHVRAVDYLLE---GGESVALNLGTGTGTTVKELLDAIEKVAKRPFNIGYAERREGDSTTLVANNDKARQVLGWEPQYDLAAITESAWNWHSRRNQG 327          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 57/145 (39.31%), Postives = 90/145 (62.07%), Query Frame = -3
Query:  344 IGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWK-AKYGIDEMCRDQWNWASK 775
            +GE+ R I  +L+P V QVA+G R ++ +FG D+ T+DGT +RDYIH+ DLAD HI AL    + +    ++NLG+G+G SV +++    + +G  IP   + RR GD  ++ AS+ KA+ EL WK  +  +  +  D W + S+
Sbjct:  176 VGEN-REIETHLIPLVLQVALGHRDKIFMFGDDWPTEDGTPIRDYIHIRDLADAHILALQ--SNVEGSHRIFNLGSGEGYSVKQVIDTCREVTGHLIPAEVAPRRAGDPAVLIASSAKAQSELGWKPQRTDLHTIVSDAWAFTSQ 317          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: EXOB_AZOBR (UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = -3
Query:  353 GEDPRGIPNNLMPFVT-------QVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYG-IDEMCRDQWNW 772
            G DP G      P  T       Q  +GRRP L +FGTDY T DGT +RDYIHV DLAD H+ AL  L     G  + N G G+G SV E+V   E+ SG+++P   + RRPGD   + A   +   +L W  K+  +D + R   +W
Sbjct:  181 GADPAGRTGQATPVATHLIKVACQALLGRRPPLAIFGTDYDTPDGTCIRDYIHVSDLADAHVLALLHLRRGG-GSLLMNCGYGRGASVREVVRTLEEVSGEQVPATFADRRPGDPPQLVAGADRIREQLGWVPKHDRLDGIVRSALSW 327          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = -3
Query:  329 AVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWASKNPYGY 718
            A G  P L + GTDY T DGT VRDYI V DL D H+ AL K    K+G  ++N+GTGKG+SV E V A +KA+G  I +    RR GD   VY+   K + ELNW AK+  + E  +  W W   +  GY
Sbjct:  280 ARGIIPGLQIKGTDYKTVDGTCVRDYIDVTDLVDAHVKALEKAKPRKVG--IFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYAEVYSDPRKIKEELNWTAKHTNLQESLKMAWRWQKLHRSGY 408          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = -3
Query:  326 NNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQWNWASKNPYGYE 748
            ++L+P V QVA GRR  ++V+G DY T D T VRDYIHV DLA+ H+ A+ +   P     + NLG G G SV E+V    + +G  IP + + RR  D  ++ AS G A  +L W        +  D W W S +P GY+
Sbjct:  189 SHLIPLVLQVAQGRREAISVYGDDYPTPD-TCVRDYIHVADLAEAHLLAVRRR--PGNEHLICNLGNGNGFSVREVVETVRRVTGHPIPEIMAPRRGRDPAVLVASAGTAREKLGWNPSRADLAIVSDAWEWHSSHPKGYD 326          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: GALE_CORGL (UDP-glucose 4-epimerase OS=Corynebacterium glutamicum GN=galE PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  347 IGEDPRGIPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLDDPKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKY-GIDEMCRDQWNWAS 775
            IGE+ R +  +L+P V QVA G R +  +FG D+ T DGT VRDYIH++DLA  H+ AL   +  K    ++NLG+G G SV ++V    + +G  IP   + RR GD   + AS+ KA++EL W  ++  +  +  D W + S
Sbjct:  176 IGEN-REVETHLIPLVLQVATGHREKTFMFGDDWPTPDGTAVRDYIHILDLAKAHVLALESNEAGK--HRIFNLGSGDGYSVKQVVEMCREVTGHPIPAEVAPRRAGDPATLIASSEKAKQELGWTPEHTDLRTIVEDAWAFTS 316          
BLAST of CX043648 vs. ExPASy Swiss-Prot
Match: GALE_MYCPN (UDP-glucose 4-epimerase OS=Mycoplasma pneumoniae GN=galE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = -3
Query:  362 IPNNLMPFVTQVAVGRRPELTVFGTDYSTKDGTGVRDYIHVIDLADGHIAALHKLD-DPKIGCEVYNLGTGKGTSVLEMVAAFEKA-SGKKIPLVKSGRRPGDAEIVYASTGKAERELNWKAKYGIDEMCRDQ 754
            IPN +  F+       +    ++G DY TKDG+ +RDYIHV+DL D H+ A   L  +PK+  E +NLG+G+G S  E++   +   + +++ L    RR GD  ++     KA+R LN++    + +M  D+
Sbjct:  201 IPNLIKAFM------EKRTFFLYGDDYDTKDGSCIRDYIHVVDLCDAHLLAWKWLQANPKVRFESFNLGSGQGFSNWEVINTAQAIFAPEQLQLKIESRRAGDPPVLVVDCTKAKRLLNFQPTRSLHKMLSDE 327          
The following BLAST results are available for this feature:
BLAST of CX043648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
ARAE2_ORYSJ6.069e-2446.56Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
ARAE1_ARATH6.069e-2446.56UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
GALE_LACHE1.352e-2340.79UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
EXOB_RHIME1.352e-2342.03UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]
GALE_CORDI1.495e-2239.31UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
EXOB_AZOBR1.495e-2240.54UDP-glucose 4-epimerase OS=Azospirillum brasilense... [more]
ARAE2_ARATH1.495e-2245.80Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
GALE_STRLI9.690e-2240.43UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]
GALE_CORGL2.819e-2139.58UDP-glucose 4-epimerase OS=Corynebacterium glutami... [more]
GALE_MYCPN9.712e-1433.83UDP-glucose 4-epimerase OS=Mycoplasma pneumoniae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12E09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12E09-I18-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043648 ID=CX043648; Name=CX043648; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTGCAAGAAAGGAAGAAAATCTTTAAATTAATAAGCTGA
AAATTTGAAGACCAATAATCAACACACCAATGACACTGTTCCAAATAAGG
GAATGCCTAGATAAATCTTCACAGTAGAAGATTGTATAGGGGACCTTCTA
TTGTTGTACAATACCACAAGGAGATTGTATAGGGGACCTTCTATTGTTGT
ACAATACCACAAGGTTTTTCAGCTTAAAAATCTGATAATTAAGTGTACAG
AATAGACACTGTATATAGCGAGGAACTACTAAGAAGGATGACAAATGACA
GTTATTAGCTAGTCGAGTTGGAAGATTCATAGCCATAAGGGTTCTTGCTG
GCCCAATTCCATTGATCCCTACACATCTCGTCAATGCCATATTTTGCCTT
CCAATTCAATTCACGTTCTGCCTTTCCTGTTGATGCATAAACAATTTCTG
CGTCACCGGGTCGCCTCCCAGACTTTACAAGAGGAATTTTCTTTCCAGAG
GCTTTTTCAAATGCTGCAACCATCTCCAAAACTGATGTCCCTTTTCCCGT
TCCCAAGTTGTACACCTCACAACCTATCTTAGGATCATCAAGCTTATGCA
ATGCAGCAATGTGCCCATCAGCTAAGTCAATAACATGAATGTAATCACGG
ACCCCAGTACCATCCTTTGTTGAGTAATCAGTTCCAAATACTGTCAGCTC
TGGACGCCTGCCAACAGCAACTTGAGTGACGAAGGGCATGAGATTGTTTG
GAATTCCACGGGGATCCTCACCAATTTTGC
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