EY720587

Overview
NameEY720587
Unique NameEY720587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 109/221 (49.32%), Postives = 149/221 (67.42%), Query Frame = 2
Query:   29 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            GLELI SENF S++V++ +GS++TNKY+EGYP  RYYGG E++D AE L  +RA   F         NVQ  SGS +N  VY AL +P D IM + L HGGHL+HG       ++     F+ +PY +N  T  IDYD++ + A   +PK+IVAG SAYAR+ D++R R++ ++  A ++ DMAH +GLVAAG+ P+P EYAHV  +TTHK+L GPRG +I
Sbjct:   26 GLELIASENFASLAVIETMGSMLTNKYAEGYPQKRYYGGCEWVDRAEELAIERAKRLFGAK----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTHG-----APVNFSGKIFKVVPYGVNLETETIDYDEVRRLALEHKPKIIVAGGSAYARIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPLEYAHVVTSTTHKTLRGPRGGLI 237          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_SODGM (Serine hydroxymethyltransferase OS=Sodalis glossinidius (strain morsitans) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 110/229 (48.03%), Postives = 152/229 (66.38%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDI 718
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA   F  D      NVQ  SGS +NF VYT LL+P D ++ ++L HGGHL+HG       ++     +  +PY ++ES G+IDYDQL + A   +PK+I+ G SAY+ + D+ R+R++ +   A +  DMAH++GL+AAGV P+P  +AHV  TTTHK+L GPRG +I  + G  ++
Sbjct:   30 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKALFGADY----ANVQPHSGSQANFAVYTTLLQPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GHIDYDQLAELAKTHQPKMIIGGFSAYSGVVDWARMRQIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_SERP5 (Serine hydroxymethyltransferase OS=Serratia proteamaculans (strain 568) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 109/229 (47.60%), Postives = 151/229 (65.94%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDI 718
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D I+ ++L HGGHL+HG       ++     +  +PY ++E  G IDY+ L K A   +PK+I+ G SA++ + D+ ++R++ +   A +  DMAH++GL+AAGV P+P  +AH+  TTTHK+L GPRG +I  + G  D+
Sbjct:   30 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTILGMNLAHGGHLTHG-----SPVNLSGKLYNVVPYGIDEK-GQIDYEDLAKQAQTHKPKMIIGGFSAFSGIVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHIVTTTTHKTLAGPRGGLILAKGGDEDL 248          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 111/223 (49.78%), Postives = 149/223 (66.82%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFR 700
            LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A   +PK+IV GASAY R+ D+E  R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA    TTTHK+L GPRG MI  R
Sbjct:   26 LELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGADH----VNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCR 239          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 111/223 (49.78%), Postives = 149/223 (66.82%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFR 700
            LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A   +PK+IV GASAY R+ D+E  R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA    TTTHK+L GPRG MI  R
Sbjct:   26 LELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGADH----VNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMIMCR 239          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_ECOLU (Serine hydroxymethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 111/229 (48.47%), Postives = 152/229 (66.38%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDI 718
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY ++ S G+IDY  LEK A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GLVAAGV P+P  +AHV  TTTHK+L GPRG +I  + G  ++
Sbjct:   30 IELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGIDAS-GHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.236e-54
Identity = 112/220 (50.91%), Postives = 153/220 (69.55%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            +ELI SENF S +VM A+GS +TNKY+EGYPG RYYGG E++D+AE+L  +RA + F         NVQ  SG+ +N  V+ ALL+P D +M ++L HGGHL+HG       ++    +F  +PY ++++ G+IDY+++EK A   +PKLIVAGASAYAR  D++R R++ +   A ++ DMAHI+GLVAAG   SP  YAHV  TTTHK+L GPRG MI
Sbjct:   29 IELIASENFVSKAVMAAMGSPLTNKYAEGYPGKRYYGGCEFVDIAENLAIERAKKLFGCTY----ANVQPHSGAQANMAVFFALLQPGDTVMGMNLAHGGHLTHG-----SPVNFSGSYFNIVPYGVDDN-GFIDYEEVEKIAKECKPKLIVAGASAYARKIDFKRFREIADLVGAYLMVDMAHIAGLVAAGYHQSPIPYAHVTTTTTHKTLRGPRGGMI 238          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.615e-54
Identity = 111/223 (49.78%), Postives = 151/223 (67.71%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFR 700
            LELI SENFTS +V++A GSV TNKY+EGYPG RYYGG EY D+ E+L ++RA + F  +     VNVQ  SGS +N   Y A++ P D +M L+L HGGHL+HG+  +    +     ++ +PY + +    IDYD++EK A   +PK+I+AGASAY R+ D+ R RK+ +   A+ L DMAHISGLVAAGV P+P E+A +  +TTHK+L GPR  +I  R
Sbjct:   33 LELIASENFTSEAVLEATGSVFTNKYAEGYPGKRYYGGCEYTDVVENLARERASKLFGAEY----VNVQPHSGSQANQAAYGAVVSPGDTVMGLNLAHGGHLTHGHALNFSGKT-----YKIVPYNVRKEDELIDYDEVEKLAREHQPKMIIAGASAYPRIIDFARFRKIADAVGAVFLVDMAHISGLVAAGVHPNPCEFADIVTSTTHKTLRGPRAGIILAR 246          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.615e-54
Identity = 115/232 (49.57%), Postives = 154/232 (66.38%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMISFRTGVTDITNP 727
            LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     +E   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D +  R + +K  A ++AD+AH +GL+AAG++ +P  + H   TTTHK+L GPRG MI      +D  NP
Sbjct:   28 LELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCDY----VNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SSVNFSGQMYEAHSYGVDRETGCIDMNKVEELALQVRPKLIICGASAYSQGFDVKAFRVIADKVGAFLMADIAHPAGLIAAGLLGNPLPHCHFVTTTTHKTLRGPRGGMIMMG---SDFENP 247          
BLAST of EY720587 vs. ExPASy Swiss-Prot
Match: GLYA_METCA (Serine hydroxymethyltransferase OS=Methylococcus capsulatus GN=glyA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.615e-54
Identity = 109/220 (49.55%), Postives = 148/220 (67.27%), Query Frame = 2
Query:   32 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAHVGDTTTHKSLPGPRGTMI 691
            +ELI SEN+ S  V+QA G+V+TNKY+EGYPG RYYGG EY+D+ E+L  +RA   F  D      NVQ  SGS +N  VY ALLKP D ++ + L HGGHL+HG      K++     +  + Y LN  TG IDYDQ+++ A   RPK+IVAG SAY+++ D++R R + +   A ++ DMAH++GL+AAG+ PSP + A V  TTTHK+L GPRG +I
Sbjct:   30 IELIASENYASPRVLQAQGTVLTNKYAEGYPGKRYYGGCEYVDIVETLAIERAKRLFGADY----ANVQPHSGSQANAAVYMALLKPGDTVLGMSLAHGGHLTHG-----AKVNFSGKIYNAVQYGLNPETGEIDYDQVDELAREHRPKMIVAGFSAYSQVVDWQRFRAIADSVGAWLMVDMAHVAGLIAAGLYPSPVQIADVTTTTTHKTLRGPRGGLI 240          
The following BLAST results are available for this feature:
BLAST of EY720587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEP11.236e-5449.32Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_SODGM1.236e-5448.03Serine hydroxymethyltransferase OS=Sodalis glossin... [more]
GLYA_SERP51.236e-5447.60Serine hydroxymethyltransferase OS=Serratia protea... [more]
GLYA_GEOSM1.236e-5449.78Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_GEOBB1.236e-5449.78Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_ECOLU1.236e-5448.47Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_CLOPH1.236e-5450.91Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_SOLUE1.615e-5449.78Serine hydroxymethyltransferase OS=Solibacter usit... [more]
GLYA_PELPB1.615e-5449.57Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_METCA1.615e-5449.55Serine hydroxymethyltransferase OS=Methylococcus c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-011-E09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720587 ID=EY720587; Name=EY720587; organism=Citrus sinensis; type=EST; length=818bp
CACGCGTCCGTTTTGTGTGATTTTGAAGGGACTTGAACTCATTCCTTCAG
AGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACC
AACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGA
GTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGCCCTGGAAGCAT
TTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGA
TCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAG
GATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATC
AGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATG
CCATACAGATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGA
GAAAAGTGCCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTG
CTTATGCACGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAA
CAAAAAGCTATAATGTTGGCAGATATGGCACACATTAGTGGGTTGGTTGC
TGCTGGTGTCATCCCTTCACCTTTTGAGTATGCACATGTTGGTGACACCA
CAACTCACAAATCACTTCCTGGGCCACGTGGCACCATGATCTCCTTTAGG
ACGGGAGTGACAGACATTACAAACCCGGGAAGGGGGTGTCTCTGATTATG
AAGAGAAAGGAAGTCAGCGGGCTTGCGTGAAGGCCAGGTGGGCGGAATAG
CGGGGGATTAGTGGTTAG
back to top