EG358356

Overview
NameEG358356
Unique NameEG358356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_ESCF3 (Aminomethyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+EI++P+E+A D  + ++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_ECOUT (Aminomethyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+EI++P+E+A D  + ++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_ECOL6 (Aminomethyltransferase OS=Escherichia coli O6 GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+EI++P+E+A D  + ++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_ECO7I (Aminomethyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+EI++P+E+A D  + ++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_ECO45 (Aminomethyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+EI++P+E+A D  + ++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_ECO27 (Aminomethyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+EI++P+E+A D  + ++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_THEMA (Aminomethyltransferase OS=Thermotoga maritima GN=gcvT PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 62/174 (35.63%), Postives = 88/174 (50.57%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAV---DLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 515
            TGEDGFE+ + ++ A    D    +L K +G  R  GLGARD  RLEA   LYG DM+++  P E GL+W +    +    F+G E +LK  ++          +G   AR   +V  + G  +GEITSG FSP L K+IA+  V   +        +   GK  +  + K PF
Sbjct:  189 TGEDGFELMLEAKNAPKVWDALMNLLRKIDG--RPAGLGARDVCRLEATYLLYGQDMDENTNPFEVGLSWVV----KLNKDFVGKEALLKAKEKVERKLVALELSGKRIARKGYEVL-KNGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLGVVFPGGKLVEALVVKKPF 355          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_SHIDS (Aminomethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+EI++P+E+A D  + ++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDVQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_NOCFA (Aminomethyltransferase OS=Nocardia farcinica GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 59/179 (32.96%), Postives = 96/179 (53.63%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEK---SEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 527
            TGE G+E+      A  + + +LE+   ++G+    GLGARD+LR E G  L+G+++ + ++PV+A   WA+G R+     F G   + ++   GP    +G  A         +     G P+GE TSG FSP LK  IA+  + +G   + G +V ++VRG+     + K PFVP++
Sbjct:  191 TGEHGYEVLPRWADAEPVFRALLEQVRAADGQP--AGLGARDTLRTEMGYPLHGHELSREISPVQARTGWAVGWRKPQ---FWGKAALEQEKAAGPRRILMGLKAIDRGVLRQGQPVLRDGEPVGETTSGTFSPTLKVGIALALLDTGAGLEPGAEVAVDVRGRRLRCEVVKPPFVPSR 364          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_LEPBP (Aminomethyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILE--KSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 482
            TGEDGFEI   +   V L K +LE  K  G V + GLGARD+LRLEA   LYG+++    TPVE+G+ + + ++ +    +LG ++I+     GP  + VG     P   R +  +    G  IG+ TSG  SP  K+++ +  +++   K  T+V +E+RG+
Sbjct:  192 TGEDGFEIYTSNALGVTLWKELLEIGKDFGLVPV-GLGARDTLRLEAKYPLYGHELNAEWTPVESGINFIVKEKSKP---YLGYDRIIADKKNGPKSKVVGVRLLEPGVLRENFPIFAADGKEIGKTTSGTHSPSRKESLGLAILQTEFAKNQTEVFVEIRGQ 350          
The following BLAST results are available for this feature:
BLAST of EG358356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_ESCF35.582e-1835.20Aminomethyltransferase OS=Escherichia fergusonii (... [more]
GCST_ECOUT5.582e-1835.20Aminomethyltransferase OS=Escherichia coli (strain... [more]
GCST_ECOL65.582e-1835.20Aminomethyltransferase OS=Escherichia coli O6 GN=g... [more]
GCST_ECO7I5.582e-1835.20Aminomethyltransferase OS=Escherichia coli O7:K1 (... [more]
GCST_ECO455.582e-1835.20Aminomethyltransferase OS=Escherichia coli O45:K1 ... [more]
GCST_ECO275.582e-1835.20Aminomethyltransferase OS=Escherichia coli O127:H6... [more]
GCST_THEMA7.290e-1835.63Aminomethyltransferase OS=Thermotoga maritima GN=g... [more]
GCST_SHIDS7.290e-1835.20Aminomethyltransferase OS=Shigella dysenteriae ser... [more]
GCST_NOCFA7.290e-1832.96Aminomethyltransferase OS=Nocardia farcinica GN=gc... [more]
GCST_LEPBP7.290e-1836.20Aminomethyltransferase OS=Leptospira biflexa serov... [more]

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Properties
Property NameValue
Genbank description3g1 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003g1, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358356 ID=EG358356; Name=EG358356; organism=Citrus sinensis; type=EST; length=545bp
ACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATCTGAGCGTGCAGTG
GATCTTGCCAAAACAATTCTGGAGAAATCTGAAGGAAAGGTGAGGTTGAC
AGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCTGGCTTATGTTTAT
ATGGTAATGACATGGAACAACACGTGACACCTGTAGAAGCTGGACTGACA
TGGGCCATAGGAAAGAGGAGGAGAGCAGAAGGTGGCTTTCTAGGTGCTGA
GAAAATACTCAAACAACTTGACGAAGGTCCGCCAGTCAGACGTGTTGGAT
TCTTCGCTGGAGGTCCGCCTGCCAGATCACACAGTAAGGTTCACGATGAG
CAAGGGAATCCCATTGGAGAAATTACCAGTGGAGGATTCAGCCCCTGCCT
CAAGAAGAATATAGCCATGGGATATGTAAAATCTGGATTGCACAAGGCAG
GCACAAAAGTTAAGATTGAGGTTCGAGGAAAAGCCTACGATGGAAACATC
ACTAAAATGCCATTTGTGCCAACAAAATACTACAAGCCGTCTTAG
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