EG358356

Overview
NameEG358356
Unique NameEG358356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_SHEPW (Aminomethyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 59/176 (33.52%), Postives = 82/176 (46.59%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 518
            TGE G+E+ VP   A  L +  L+     V+  GLGARD+LRLEAG+ LYG DM++ V P+ A + W +      E       K L+++      + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGETGYEVIVPEAEAEALWQAFLDAG---VKPCGLGARDTLRLEAGMNLYGLDMDESVNPLAANMGWTVA--WAPEDRDFNGRKALEKIKAEGADKLVGLIMDAKGVIRHGMSVFFTDSDGVEQQGTITSGTFSPTLGYSIAMARVPNTI---GDVAEVEMRKKRVPVKVIAPSFV 357          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_MYCTU (Aminomethyltransferase OS=Mycobacterium tuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEK-SEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 527
            TGE G+E+  P E A  +   +L   S       GLGARD+LR E G  L+G+++   ++P++A   WA+G R+ A   F G   +L +   GP     G    G                +G  TSG FSP L+  I +  + S    + G ++ ++VRG+A +  +   PFV  K
Sbjct:  192 TGEHGYELLPPWESAGVVFDALLAAVSAAGGEPAGLGARDTLRTEMGYPLHGHELSLDISPLQARCGWAVGWRKDA---FFGRAALLAEKAAGPRRLLRGLRMVGRGVLRPGLAVLVGDETVGVTTSGTFSPTLQVGIGLALIDSDAGIEDGQQINVDVRGRAVECQVVCPPFVAVK 365          
BLAST of EG358356 vs. ExPASy Swiss-Prot
Match: GCST_MYCBO (Aminomethyltransferase OS=Mycobacterium bovis GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = 3
Query:    3 TGEDGFEISVPSERAVDLAKTILEK-SEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 527
            TGE G+E+  P E A  +   +L   S       GLGARD+LR E G  L+G+++   ++P++A   WA+G R+ A   F G   +L +   GP     G    G                +G  TSG FSP L+  I +  + S    + G ++ ++VRG+A +  +   PFV  K
Sbjct:  192 TGEHGYELLPPWESAGVVFDALLAAVSAAGGEPAGLGARDTLRTEMGYPLHGHELSLDISPLQARCGWAVGWRKDA---FFGRAALLAEKAAGPRRLLRGLRMVGRGVLRPGLAVLVGDETVGVTTSGTFSPTLQVGIGLALIDSDAGIEDGQQINVDVRGRAVECQVVCPPFVAVK 365          
The following BLAST results are available for this feature:
BLAST of EG358356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SHEPW1.858e-1333.52Aminomethyltransferase OS=Shewanella piezotolerans... [more]
GCST_MYCTU1.858e-1331.07Aminomethyltransferase OS=Mycobacterium tuberculos... [more]
GCST_MYCBO1.858e-1331.07Aminomethyltransferase OS=Mycobacterium bovis GN=g... [more]

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Properties
Property NameValue
Genbank description3g1 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Blonde cadenera cultivar Citrus sinensis cDNA clone Cl0003g1, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358356 ID=EG358356; Name=EG358356; organism=Citrus sinensis; type=EST; length=545bp
ACACTGGTGAAGATGGATTTGAAATCTCTGTTCCATCTGAGCGTGCAGTG
GATCTTGCCAAAACAATTCTGGAGAAATCTGAAGGAAAGGTGAGGTTGAC
AGGTCTCGGTGCTCGAGACAGTCTCCGACTTGAAGCTGGCTTATGTTTAT
ATGGTAATGACATGGAACAACACGTGACACCTGTAGAAGCTGGACTGACA
TGGGCCATAGGAAAGAGGAGGAGAGCAGAAGGTGGCTTTCTAGGTGCTGA
GAAAATACTCAAACAACTTGACGAAGGTCCGCCAGTCAGACGTGTTGGAT
TCTTCGCTGGAGGTCCGCCTGCCAGATCACACAGTAAGGTTCACGATGAG
CAAGGGAATCCCATTGGAGAAATTACCAGTGGAGGATTCAGCCCCTGCCT
CAAGAAGAATATAGCCATGGGATATGTAAAATCTGGATTGCACAAGGCAG
GCACAAAAGTTAAGATTGAGGTTCGAGGAAAAGCCTACGATGGAAACATC
ACTAAAATGCCATTTGTGCCAACAAAATACTACAAGCCGTCTTAG
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