EY686949

Overview
NameEY686949
Unique NameEY686949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.252e-23
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 1
Query:  241 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHFGCIPLPNAGAF 519
            S + S DVLAL+S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A +V ++ L DP+ D VRVK  +  WLV +G+CTH GC+PL + G +
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLGCVPLSHKGEY 134          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  241 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHFGCIPLPNAGAF 519
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTH GC+PL N G +
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLGCVPLANQGEY 134          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  241 SMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHFGCIPLPNAGAF 519
            S++ S DVLAL+S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V ++ L DP+ D  RVK  +  WLV +G+CTH GC+PL N G +
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLGCVPLANQGEY 134          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.546e-22
Identity = 62/148 (41.89%), Postives = 81/148 (54.73%), Query Frame = 1
Query:  118 HNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRD-----------PQEDSVRVKNP--EWLVVVGVCTHFGCIPL-PNAGAF 519
            H  E      A++R F Y+   G   V A      ++     M+ S DV ALAS++VD+S +E GT +TVKW GKPVFIRRRTE++IQ    VD+  L D           P  D  R  +   EWLV++GVCTH GC+P+   AG F
Sbjct:    3 HADEHAGDHGATRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDF 147          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 1
Query:  244 MSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVR------------------VKNPEWLVVVGVCTHFGCIPL 501
            M+AS DV A+AS+ VD+S++E GT +TVKWRGKPVFIRRR E+DI+LA SV + +LRD   ++                        EWLV++GVCTH GC+P+
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPM 141          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  232 FVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHFGCIPLPNAGAF 519
            F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A +V+VASL DPQ D  RVK  + +WLVV+G+CTH GCIP+ + G +
Sbjct:   35 FISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLGCIPIAHEGNY 133          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 52/126 (41.27%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  145 DASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVK--NPEWLVVVGVCTHFGCIPLPNAG 513
            +A++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++IQ   + DV +L DPQ DS RVK    EWLVV   CTH GCIPL + G
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLGCIPLGHQG 130          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 52/131 (39.69%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  151 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRV--------------KNPEWLVVVGVCTHFGCIPL 501
            ++R F Y+   G   V        +   +  M+ S DV ALAS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  SV +  L D    +  +              +  EWLV+ GVCTH GC+P+
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCVPI 137          
BLAST of EY686949 vs. ExPASy Swiss-Prot
Match: UCRI_CHRVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Chromatium vinosum GN=petA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 38/102 (37.25%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  223 ILKFVLSMSASKDVLAL-ASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVD---------VASLRDPQEDSVRVKNPEWLVVVGVCTHFGCIP 498
            ++ FV SM+ S    A  A +E D+S +EPG  + VKWRG PV++  R+ E +   +S D         V    D  ++  R   PE+LV +G+CTH GC P
Sbjct:   40 LVPFVASMNPSARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVHRSSEMLAALSSNDPKLVDPTSEVPQQPDYCKNPTRSIKPEYLVAIGICTHLGCSP 141          
The following BLAST results are available for this feature:
BLAST of EY686949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_RICPR2.252e-2353.68Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE3.841e-2354.74Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN3.841e-2354.74Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE5.546e-2241.89Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA1.366e-2048.08Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA1.973e-1947.47Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI1.279e-1841.27Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH1.279e-1839.69Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_CHRVI9.813e-1137.25Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-031-B09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686949 ID=EY686949; Name=EY686949; organism=Citrus sinensis; type=EST; length=763bp
ATCAGAGGTTTGTCTGCTGAAGCCCTCAGTCTAGGACGTGATTTGGGTCT
GATCTCAGACCTTCCAGCTACTGTGGCAGCTGTGAAGAACCCAACTTCAA
AAATTGTCTATGATGAGCACAATCATGAGCGTTATCCACCTGGTGACGCC
AGCAAGCGTGCATTTGCTTATTTTATCTTGACAGGTGGCAGGTTTGTGTA
TGCCTCCTTAATTCGTCTTTTGATCCTCAAGTTTGTTCTTAGCATGTCTG
CGAGCAAAGATGTCCTTGCCCTTGCCTCCCTTGAGGTTGACCTATCCAGC
ATTGAACCCGGGACTACTGTTACAGTCAAGTGGCGTGGGAAGCCAGTTTT
CATCAGGCGTCGGACTGAAGAGGATATTCAGTTGGCTAACAGTGTTGATG
TAGCGTCACTCCGGGACCCACAGGAAGATTCTGTCAGGGTTAAGAATCCA
GAATGGCTTGTCGTTGTTGGTGTGTGCACACATTTTGGGTGCATTCCTTT
ACCAAATGCTGGTGCCTTTTGGAAGGTGGCTCCGCGCCCGCCCACGGCCT
GACCATGACGCGCCTAGGCCGATCCGCCGTGGAGAGAGGCACCACGACAG
CAAACGCTACCTAATAGCACGCCCCCCGTCATTTTATGTGATGCCCGCGC
CGGCTCGCGCGGCGCACGAAACAGAAAACTAATCTGCGTCTTGAGTAAGG
CCGCTTGAGGCGGCGAATCGACGCGAGCACACGAGGGGCGCCTCGCAAAG
TACACGGCGGACA
back to top