CX672136 | Citrus Genome Database

Overview


Name	CX672136
Unique Name	CX672136
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	721

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 2.973e-56
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 2.973e-56
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 2.973e-56
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 2.973e-56
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 2.973e-56
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 2.973e-56
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.973e-56
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 2.973e-56
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.973e-56
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 2.973e-56
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.053e-56
Identity = 89/114 (78.07%), Postives = 98/114 (85.96%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL+ HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 5.053e-56
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.588e-56
Identity = 87/114 (76.32%), Postives = 99/114 (86.84%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK +G+   RKLK+HR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGD
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGD 114

HSP 2 Score: 49.2914 bits (116), Expect = 8.588e-56
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:  114 DIPGVRFKIVKVANTSLIALFKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 1.120e-55
Identity = 89/114 (78.07%), Postives = 98/114 (85.96%), Query Frame = 2

Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL+SHRR  +W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGD
Sbjct:    1 MGKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 1.120e-55
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:  114 DIPGVRFKVVKVANVSLLALYKGKKERPRS 143

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.795e-54
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 2

Query:   62 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            GK RG+ A RKL +HRR QRWAD  YKK  LG  +K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC +VQLIKNGKK+ AFVPNDGCLN+I+ENDEVL+AGFGRKG A GD
Sbjct:    4 GKPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGD 116

HSP 2 Score: 55.8398 bits (133), Expect = 7.795e-54
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:  116 DIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145

BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.325e-53
Identity = 83/113 (73.45%), Postives = 96/113 (84.96%), Query Frame = 2

Query:   62 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            GK RG+ A RKL+++RR QRW+D  YKK  LG  +K  PF GSSHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GD
Sbjct:    4 GKPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGD 116

HSP 2 Score: 55.8398 bits (133), Expect = 1.325e-53
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3

Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:  116 DIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145

The following BLAST results are available for this feature:

BLAST of CX672136 vs. ExPASy Swiss-Prot

BLAST of CX672136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
RS23_RAT	2.973e-56	78.95	40S ribosomal protein S23 OS=Rattus norvegicus GN=...	[more]
RS23_MOUSE	2.973e-56	78.95	40S ribosomal protein S23 OS=Mus musculus GN=Rps23...	[more]
RS23_HUMAN	2.973e-56	78.95	40S ribosomal protein S23 OS=Homo sapiens GN=RPS23...	[more]
RS23_CHILA	2.973e-56	78.95	40S ribosomal protein S23 OS=Chinchilla lanigera G...	[more]
RS23_BOVIN	2.973e-56	78.95	40S ribosomal protein S23 OS=Bos taurus GN=RPS23 P...	[more]
RS23_ICTPU	5.053e-56	78.07	40S ribosomal protein S23 OS=Ictalurus punctatus G...	[more]
RS23_CAEEL	8.588e-56	76.32	40S ribosomal protein S23 OS=Caenorhabditis elegan...	[more]
RS23_PIG	1.120e-55	78.07	40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P...	[more]
RS23_ASPFU	7.795e-54	74.34	40S ribosomal protein S23 OS=Aspergillus fumigatus...	[more]
RS23_NEUCR	1.325e-53	73.45	40S ribosomal protein S23 OS=Neurospora crassa GN=...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672136 ID=CX672136; Name=CX672136; organism=Citrus sinensis; type=EST; length=721bp
CAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAATCCTCTTCGTA
ACGCCAACATGGGGAAGACACGTGGAATGGGAGCGGGTCGCAAGCTGAAG
AGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATACAAGAAATCCCA
CCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTTCCCATGCAAAAG
GCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAGCCCAACTCCGCT
ATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGATTGC
AGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTGAAGAAAATGACG
AGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGATTCC
TGGTGTTAGATTTAAGGTTGTCAAGGTTTCAGGCGTGTCTCTTCTGGCCC
TCTTCAAGGAGAAGAAGGAGAAACCAAGATCCTAAACTCCTGATTCAAGA
TACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAATCCCCGT
TGATTACTGTTTTCCTTTATCATGTACTGCTGTTGAGAGAACTTTTTGGT
TTTTTTCCCTCTGTTGAGACTATTAGTAAATTAGTATCTGTCTCTTCTAC
TTGAGTGGTTTGTTGACTGCCGTTGTTCTGTTAGAAAAATACCATTACTG
TATAAGATCTATCTCCTTATG