CX672136

Overview
NameCX672136
Unique NameCX672136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.727e-53
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 2 
Query:   62 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GD
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGD 116

HSP 2 Score: 57.3806 bits (137), Expect = 1.727e-53
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:  116 DIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.727e-53
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 2 
Query:   62 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GD
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGD 116

HSP 2 Score: 57.3806 bits (137), Expect = 1.727e-53
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:  116 DIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.727e-53
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 2 
Query:   62 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GD
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGD 116

HSP 2 Score: 57.3806 bits (137), Expect = 1.727e-53
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:  116 DIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.727e-53
Identity = 82/113 (72.57%), Postives = 95/113 (84.07%), Query Frame = 2 
Query:   62 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GD
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGD 116

HSP 2 Score: 57.3806 bits (137), Expect = 1.727e-53
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:  116 DIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.191e-52
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 2 
Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK RG+   RKL++HRR Q+W DK YKK+HLG   K  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+ EENDEVL+AGFGRK HAVGD
Sbjct:    1 MGKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGD 114

HSP 2 Score: 44.669 bits (104), Expect = 3.191e-52
Identity = 20/30 (66.67%), Postives = 27/30 (90.00%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:  114 DIPGVRFKVVEMANVSLLALYKGXKERPKS 143
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.191e-52
Identity = 88/114 (77.19%), Postives = 94/114 (82.46%), Query Frame = 2 
Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK  G+   RKL + RR Q+W D  YKKSHLG   K  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLNYIEENDEVL+AGFGR GHAVGD
Sbjct:    1 MGKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGD 114

HSP 2 Score: 46.595 bits (109), Expect = 3.191e-52
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:  114 DIPGVRFKIVKVANVSLHALFTGKKERPRS 143
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 9.214e-52
Identity = 82/114 (71.93%), Postives = 96/114 (84.21%), Query Frame = 2 
Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK  G+ A RKL++HRR +RWAD  YKK  LG  +K  PF GSSHAKGIV+EKIG+EAKQPNSAIRKC RVQLIKNGKK+ AFVP+DGCLN+++ENDEVL++GFGRKG A GD
Sbjct:    1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGD 114

HSP 2 Score: 50.8322 bits (120), Expect = 9.214e-52
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKPRS 482
            +IPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:  114 DIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.182e-48
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 2 
Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            +GK RG+ AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+KQPNSA+RKC RV L KN KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGD
Sbjct:    3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGD 115

HSP 2 Score: 45.4394 bits (106), Expect = 1.182e-48
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEK 473
            +IPGVRFKVV V G+SLLALFK KKEK
Sbjct:  115 DIPGVRFKVVCVKGISLLALFKGKKEK 141
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.551e-48
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 2 
Query:   59 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 397
            MGK  G+   RKL++HRR QRW DK YKK+H G   K  PF G+SHA GIV+ ++GIEAKQPNSAIRKC RVQL KNGKKI AFVPNDGCLNYI+END+VL+AG GR GH+VGD
Sbjct:    1 MGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGD 114

HSP 2 Score: 42.743 bits (99), Expect = 7.551e-48
Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = 3 
Query:  393 EIPGVRFKVVKVSGVSLLALFKEKKEKP 476
            +IPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:  114 DIPGVRFKVVKVSSVSLIAIYRGIKDKP 141
[Close]
BLAST of CX672136 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.898e-36
Identity = 64/110 (58.18%), Postives = 83/110 (75.45%), Query Frame = 2 
Query:   74 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG-RKGHAVGD 397
            G+ AGR LK+ ++RQRW+   YK+  LG + K  P  GS  A+GIVLEK+G+EAKQPNSA+RKC RVQLIKNGK I AF+P DG +N+I+E+DEV + G G  +G A+GD
Sbjct:    7 GLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGD 116

HSP 2 Score: 41.9726 bits (97), Expect = 8.898e-36
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 3 
Query:  381 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 479
            G + +IPGVRFKV KV+G SL  L   KKEKPR
Sbjct:  112 GAMGDIPGVRFKVFKVNGTSLHELVIGKKEKPR 144
The following BLAST results are available for this feature:
BLAST of CX672136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_YEAST1.727e-5372.5740S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA1.727e-5372.5740S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA1.727e-5372.5740S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA1.727e-5372.5740S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_GILMI3.191e-5275.4440S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_CIOIN3.191e-5277.1940S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_SCHPO9.214e-5271.9340S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS12_TETTH1.182e-4869.0340S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI7.551e-4870.1840S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS12_CENSY8.898e-3658.1830S ribosomal protein S12P OS=Cenarchaeum symbiosu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672136 ID=CX672136; Name=CX672136; organism=Citrus sinensis; type=EST; length=721bp
CAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAATCCTCTTCGTA
ACGCCAACATGGGGAAGACACGTGGAATGGGAGCGGGTCGCAAGCTGAAG
AGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATACAAGAAATCCCA
CCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTTCCCATGCAAAAG
GCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAGCCCAACTCCGCT
ATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGATTGC
AGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTGAAGAAAATGACG
AGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGATTCC
TGGTGTTAGATTTAAGGTTGTCAAGGTTTCAGGCGTGTCTCTTCTGGCCC
TCTTCAAGGAGAAGAAGGAGAAACCAAGATCCTAAACTCCTGATTCAAGA
TACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAATCCCCGT
TGATTACTGTTTTCCTTTATCATGTACTGCTGTTGAGAGAACTTTTTGGT
TTTTTTCCCTCTGTTGAGACTATTAGTAAATTAGTATCTGTCTCTTCTAC
TTGAGTGGTTTGTTGACTGCCGTTGTTCTGTTAGAAAAATACCATTACTG
TATAAGATCTATCTCCTTATG
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