CX672135 | Citrus Genome Database

Overview


Name	CX672135
Unique Name	CX672135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	725

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1825	contig	Csv1_Contig1825:37..763.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.752e-33
Identity = 59/110 (53.64%), Postives = 81/110 (73.64%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AG+KL   R+  RW+D+ YK+  L  + K  P  G+  AKGIV+EK+GIEAKQPNS IRKC ++QLIKNG++++AF P DG +NYI+E+DEV++ G  GR G + GD
Sbjct:    4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGD 113

HSP 2 Score: 38.891 bits (89), Expect = 1.752e-33
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KV+KV+G+SL  L K +KEK
Sbjct:  113 DIPGVRYKVIKVNGISLHELVKGRKEK 139

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.029e-33
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AG KLK  R+R +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GD
Sbjct:    9 GLFAGGKLKRKRKRFKWNDITYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVIIERIGGPEGRSLGD 118

HSP 2 Score: 45.0542 bits (105), Expect = 5.029e-33
Identity = 20/30 (66.67%), Postives = 27/30 (90.00%), Query Frame = -3

Query:  247 LWEIPGVRFKVVKVSGVSLLALFKEKKEKP 336
            L +IPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:  116 LGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.029e-33
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AG KLK  R++ RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GD
Sbjct:    9 GLFAGGKLKKKRQKFRWNDVTYKRRMLGLAEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPYDGGLNYINEHDEVIIERIGGPEGKSLGD 118

HSP 2 Score: 45.4394 bits (106), Expect = 5.029e-33
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = -3

Query:  247 LWEIPGVRFKVVKVSGVSLLALFKEKKEKP 336
            L +IPGVRFKVVKV+GVSL A+++ KK+KP
Sbjct:  116 LGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.550e-33
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AG KLK  R++ RW D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GD
Sbjct:    9 GLFAGGKLKRKRQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGD 118

HSP 2 Score: 45.0542 bits (105), Expect = 6.550e-33
Identity = 20/30 (66.67%), Postives = 27/30 (90.00%), Query Frame = -3

Query:  247 LWEIPGVRFKVVKVSGVSLLALFKEKKEKP 336
            L +IPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:  116 LGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 8.531e-33
Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  AKGIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GD
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQAKGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGD 118

HSP 2 Score: 43.1282 bits (100), Expect = 8.531e-33
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = -3

Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:  114 GSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRAR (30S ribosomal protein S12P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.531e-33
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AG KLK  R+R +W D +YK+  LG   K  P  G+  A+GIVLEK+G+EA++PN+A+RKC RVQL+KNGK + AFVP DG LNYI E+DEV+I    G +G ++GD
Sbjct:    9 GLFAGGKLKRKRKRFKWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVKNGKVVTAFVPLDGSLNYINEHDEVVIERIGGPEGRSLGD 118

HSP 2 Score: 44.2838 bits (103), Expect = 8.531e-33
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = -3

Query:  247 LWEIPGVRFKVVKVSGVSLLALFKEKKEKP 336
            L +IPGVRFKV+KV+GVSL A++  KK+KP
Sbjct:  116 LGDIPGVRFKVIKVNGVSLWAIWSGKKQKP 145

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METKA (30S ribosomal protein S12P OS=Methanopyrus kandleri GN=rps12p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.447e-32
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A RKL+  R++ RW D+ YK+  L  +E   P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNGK++ AF P DG ++YI+E+DEV+I G  G KG A GD
Sbjct:    9 GEFAARKLREKRKKFRWKDERYKRRMLKLDEKADPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAIDYIDEHDEVVIEGIGGPKGRAKGD 118

HSP 2 Score: 37.3502 bits (85), Expect = 1.447e-32
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPGVR+KVVKV+ V+L  L K K EKP
Sbjct:  118 DIPGVRYKVVKVNDVALSELLKGKIEKP 145

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.885e-32
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNSA+RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GD
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSAMRKAVRVQLIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGD 118

HSP 2 Score: 43.1282 bits (100), Expect = 1.885e-32
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = -3

Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:  114 GSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.460e-32
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AGRKL  +R++ RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G  GR G + GD
Sbjct:    4 GLNAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGD 113

HSP 2 Score: 37.3502 bits (85), Expect = 2.460e-32
Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KVV V+G+SL  L K +KEK
Sbjct:  113 DIPGVRYKVVAVNGISLKELVKGRKEK 139

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_THEAC (30S ribosomal protein S12P OS=Thermoplasma acidophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.204e-32
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AGRKL  +R++ RW+D+ YK+  L  + K  P  G+  AKGI +EK+GIEAKQPNSAIRKC +VQLIKNG++I AF   DG +NYI+E+DEV + G  GR G + GD
Sbjct:    4 GINAGRKLLENRKKFRWSDRDYKRRVLQLKRKSDPLEGAPQAKGIAIEKVGIEAKQPNSAIRKCVKVQLIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGD 113

HSP 2 Score: 37.3502 bits (85), Expect = 3.204e-32
Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KVV V+G+SL  L K +KEK
Sbjct:  113 DIPGVRYKVVAVNGISLKELVKGRKEK 139

The following BLAST results are available for this feature:

BLAST of CX672135 vs. ExPASy Swiss-Prot

BLAST of CX672135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
RS12_PICTO	1.752e-33	53.64	30S ribosomal protein S12P OS=Picrophilus torridus...	[more]
RS12_PYRIL	5.029e-33	54.55	30S ribosomal protein S12P OS=Pyrobaculum islandic...	[more]
RS12_PYRCJ	5.029e-33	54.55	30S ribosomal protein S12P OS=Pyrobaculum calidifo...	[more]
RS12_PYRAE	6.550e-33	54.55	30S ribosomal protein S12P OS=Pyrobaculum aerophil...	[more]
RS12_THECE	8.531e-33	57.27	30S ribosomal protein S12P OS=Thermococcus celer G...	[more]
RS12_PYRAR	8.531e-33	54.55	30S ribosomal protein S12P OS=Pyrobaculum arsenati...	[more]
RS12_METKA	1.447e-32	57.27	30S ribosomal protein S12P OS=Methanopyrus kandler...	[more]
RS12_PYRKO	1.885e-32	56.36	30S ribosomal protein S12P OS=Pyrococcus kodakarae...	[more]
RS12_THEVO	2.460e-32	55.45	30S ribosomal protein S12P OS=Thermoplasma volcani...	[more]
RS12_THEAC	3.204e-32	55.45	30S ribosomal protein S12P OS=Thermoplasma acidoph...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS10_15B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672135 ID=CX672135; Name=CX672135; organism=Citrus sinensis; type=EST; length=725bp
TCATAAGGAGATAGATCTTATACAGTAATGGTATTTTTCTAACAGAACAA
CGGCAGTCAACAAACCACTCAAGTAGAAGAGACAGATACTAATTTACTAA
TAGTCTCAACAGAGGGAAAAAAACCAAAAAGTTCTCTCAACAGCAGTACA
TGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAGTGCTAA
AAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGT
TTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTT
GACAACCTTAAATCTAACACCAGGAATCTCCCACAGCATGCCCCTTTCGA
CCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAGTTCAAACA
ACCATCGTTTGGTACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCT
GAACTCGAGCACATTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATA
CCGATTTTCTCAAGAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGG
CTTCTTCCATTCATTGCCAAGGTGGGATTTCTTGTATGACTTATCAGCCC
ACCTTTGTCTTCTGCGGTGGCTCTTCAGCTTGCGACCCGCTCCCATTCCA
CGTGTCTTCCCCATGTTGGCGTTACGAAGAGGATTTTTGACTGTAACGAA
CGACTTTGGAGCTTGAGAGTTGCCT