CX672135 | Citrus Genome Database

Overview


Name	CX672135
Unique Name	CX672135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	725

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1825	contig	Csv1_Contig1825:37..763.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.173e-32
Identity = 61/109 (55.96%), Postives = 75/109 (68.81%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSS-HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 649
            G+ +   L   R+ +R AD +Y+K  LG ++K    G +  AK IVLEKIG+EAKQPNSAIRK  R QLI  GKKI AFVP DG + YIE NDEV + GFG+KG +VGD
Sbjct:    3 GLFSANNLIKSRKAKRLADTAYRKRALGTKYKHSVLGRAPQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGD 111

HSP 2 Score: 41.2022 bits (95), Expect = 4.173e-32
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPG+RFKV KV  VSL A+F  KKEKP
Sbjct:  111 DIPGIRFKVCKVQNVSLHAIFTGKKEKP 138

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 5.423e-32
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GD
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGD 118

HSP 2 Score: 43.1282 bits (100), Expect = 5.423e-32
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = -3

Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:  114 GSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.219e-32
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = -2

Query:  326 TRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 655
            T G  A RKLK  R+++RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD
Sbjct:    2 TNGKYAARKLKKDRQQRRWSDSEYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGD 113

HSP 2 Score: 31.9574 bits (71), Expect = 9.219e-32
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++ GV +KV KV+GVSL+ L +   EKP
Sbjct:  113 DLSGVNYKVEKVNGVSLIELVRGNAEKP 140

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.198e-31
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A RKL+  R + RW+ + +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL KNGK + AFVP DG +NYI+E+DEV+I G  G +G ++GD
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFKIKMLGLKKKHDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLAKNGKVVTAFVPFDGGINYIDEHDEVIIEGIGGPRGRSMGD 118

HSP 2 Score: 40.817 bits (94), Expect = 1.198e-31
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPGVR+KV+ V+GVSL AL+  KK+KP
Sbjct:  118 DIPGVRYKVIMVNGVSLKALYLGKKQKP 145

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METST (30S ribosomal protein S12P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps12p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.036e-31
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A +KLK +R+  RW D  YK+  LG   K  P  GS  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV+I G  G  G ++GD
Sbjct:    3 GLFAAKKLKDNRQNFRWKDTQYKRKTLGLNIKADPLEGSPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGD 112

HSP 2 Score: 32.3426 bits (72), Expect = 2.036e-31
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPGVR+KV KV+ V+L  +   K EKP
Sbjct:  112 DIPGVRWKVTKVNNVALSEMVSGKIEKP 139

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.646e-31
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GD
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGD 118

HSP 2 Score: 43.1282 bits (100), Expect = 2.646e-31
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = -3

Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:  114 GSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.646e-31
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GD
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGD 118

HSP 2 Score: 43.1282 bits (100), Expect = 2.646e-31
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = -3

Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:  114 GSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.454e-31
Identity = 63/110 (57.27%), Postives = 79/110 (71.82%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A RKLK  R+++RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD
Sbjct:    4 GKYAARKLKQDRQQRRWSDSEYARRERGLGAKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGD 113

HSP 2 Score: 31.9574 bits (71), Expect = 3.454e-31
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++ GV +KV KV+GVSL+ L +   EKP
Sbjct:  113 DLSGVNYKVEKVNGVSLIELVRGNAEKP 140

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.498e-31
Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A RKLK  R++ RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD
Sbjct:    4 GKYAARKLKKDRQKHRWSDTDYARRERGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGD 113

HSP 2 Score: 31.9574 bits (71), Expect = 4.498e-31
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++ GV +KV KV+GVSL+ L +   EKP
Sbjct:  113 DLSGVNYKVEKVNGVSLIELVRGNAEKP 140

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.498e-31
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A +KLKS R++ +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK+I AF P DG + +I+E+DEV++ G  G  G ++GD
Sbjct:    3 GLFAAKKLKSKRQKFKWKDTHYKRRSLRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGD 112

HSP 2 Score: 35.4242 bits (80), Expect = 4.498e-31
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = -3

Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPGVR+KV KV+ VSL  + K K EKP
Sbjct:  112 DIPGVRWKVTKVNNVSLQEMVKGKIEKP 139

The following BLAST results are available for this feature:

BLAST of CX672135 vs. ExPASy Swiss-Prot

BLAST of CX672135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
RS23_ENCCU	4.173e-32	55.96	40S ribosomal protein S23 OS=Encephalitozoon cunic...	[more]
RS12_PYRHO	5.423e-32	55.45	30S ribosomal protein S12P OS=Pyrococcus horikoshi...	[more]
RS12_HALSA	9.219e-32	57.14	30S ribosomal protein S12P OS=Halobacterium salina...	[more]
RS12_STAMF	1.198e-31	53.64	30S ribosomal protein S12P OS=Staphylothermus mari...	[more]
RS12_METST	2.036e-31	57.27	30S ribosomal protein S12P OS=Methanosphaera stadt...	[more]
RS12_PYRFU	2.646e-31	54.55	30S ribosomal protein S12P OS=Pyrococcus furiosus ...	[more]
RS12_PYRAB	2.646e-31	54.55	30S ribosomal protein S12P OS=Pyrococcus abyssi GN...	[more]
RS12_HALWD	3.454e-31	57.27	30S ribosomal protein S12P OS=Haloquadratum walsby...	[more]
RS12_HALMA	4.498e-31	57.27	30S ribosomal protein S12P OS=Haloarcula marismort...	[more]
RS12_METTH	4.498e-31	54.55	30S ribosomal protein S12P OS=Methanobacterium the...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672135 ID=CX672135; Name=CX672135; organism=Citrus sinensis; type=EST; length=725bp
TCATAAGGAGATAGATCTTATACAGTAATGGTATTTTTCTAACAGAACAA
CGGCAGTCAACAAACCACTCAAGTAGAAGAGACAGATACTAATTTACTAA
TAGTCTCAACAGAGGGAAAAAAACCAAAAAGTTCTCTCAACAGCAGTACA
TGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAGTGCTAA
AAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGT
TTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTT
GACAACCTTAAATCTAACACCAGGAATCTCCCACAGCATGCCCCTTTCGA
CCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAGTTCAAACA
ACCATCGTTTGGTACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCT
GAACTCGAGCACATTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATA
CCGATTTTCTCAAGAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGG
CTTCTTCCATTCATTGCCAAGGTGGGATTTCTTGTATGACTTATCAGCCC
ACCTTTGTCTTCTGCGGTGGCTCTTCAGCTTGCGACCCGCTCCCATTCCA
CGTGTCTTCCCCATGTTGGCGTTACGAAGAGGATTTTTGACTGTAACGAA
CGACTTTGGAGCTTGAGAGTTGCCT