CX672135

Overview
NameCX672135
Unique NameCX672135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.857e-31
Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A RKLK  R++ RW+D  Y +   G   K  P  G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD
Sbjct:    4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGD 113          

HSP 2 Score: 31.9574 bits (71), Expect = 5.857e-31
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -3
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++ GV +KV KV+GVSL+ L +   EKP
Sbjct:  113 DLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.909e-31
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = -2
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            RGM A RKL+  R++ RW+D  YK+  L  + K  P  G+  A+GIV+EK+GIE++QPNSA+RKC RVQL+KNGK + AF+P DG L ++ E+DEV+I G  G +G A GD
Sbjct:    8 RGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGD 118          

HSP 2 Score: 38.1206 bits (87), Expect = 9.909e-31
Identity = 15/28 (53.57%), Postives = 24/28 (85.71%), Query Frame = -3
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++PGVR+KV+KV+GVSL  + + +K+KP
Sbjct:  118 DLPGVRWKVIKVNGVSLKEILRGRKQKP 145          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.680e-30
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = -2
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A RKL+  R + RW+ + +K+  L  + K  P  G+  A+GIVLEK+G+EA++PNSA+RKC RVQL+KNGK + AFVP DG LN I E+DEV+I G  G +G ++GD
Sbjct:    9 GLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGD 118          

HSP 2 Score: 40.817 bits (94), Expect = 1.680e-30
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = -3
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPGVR+KVV V+GVSL A+ K KK+KP
Sbjct:  118 DIPGVRYKVVLVNGVSLDAILKGKKQKP 145          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 2.188e-30
Identity = 56/111 (50.45%), Postives = 81/111 (72.97%), Query Frame = -2
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G+ A RKL+  R +  W+ +S+K+  L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RK  RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD
Sbjct:    8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGD 118          

HSP 2 Score: 42.3578 bits (98), Expect = 2.188e-30
Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = -3
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++PGVR+KVV V+GVSL AL+K KK+KP
Sbjct:  118 DLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.711e-30
Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = -2
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +GM A RKL+  R + RW  + +K+  L  + K  P  G+  A+G+VLEK+GIE++QPNSA+RK  RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD
Sbjct:    8 KGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGD 118          

HSP 2 Score: 41.9726 bits (97), Expect = 3.711e-30
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = -3
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:  118 DLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.844e-30
Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = -2
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            RG+ A RKL  +R++ RW+D+ + +  LG   K  P  G+  A+GIVLEKIGIEA+QPNSAIRK  RVQLIKNG++I AF P DG +N+I+E+DEV++    GR G ++GD
Sbjct:    3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGD 113          

HSP 2 Score: 35.039 bits (79), Expect = 4.844e-30
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = -3
Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KVVKV+  SL  L + +KEK
Sbjct:  113 DIPGVRYKVVKVNNTSLRELVRGRKEK 139          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.292e-30
Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = -2
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A RKL+  R + RW+++ +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQLIKNG+ + AFVP DG L  ++E+DEVLI G  G +G ++GD
Sbjct:    9 GLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGD 118          

HSP 2 Score: 38.5058 bits (88), Expect = 6.292e-30
Identity = 16/29 (55.17%), Postives = 25/29 (86.21%), Query Frame = -3
Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVR++VV V+GVSL A+ + +K+KP+
Sbjct:  118 DIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.213e-30
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = -2
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A  +L+  R+  RW D  Y +  LG + K  P +G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GD
Sbjct:    4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGD 113          

HSP 2 Score: 38.891 bits (89), Expect = 8.213e-30
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = -3
Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPGVRFKV+ V+ VSL  +   +KEKPR
Sbjct:  109 GAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.069e-29
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = -2
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A RKL   R+  RW+D+ Y +  L  +E   P  G+  AKGIVLEK+G+EAKQPNSAIRKC R+QLIKNG++I AF P DG +N+I+E+DEV I G  GR G + GD
Sbjct:    4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGD 113          

HSP 2 Score: 34.2686 bits (77), Expect = 1.069e-29
Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = -3
Query:  247 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKP 342
            G   +IPGVRF+V KV+ VSL  +   K++KP
Sbjct:  109 GSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140          
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.069e-29
Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = -2
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A RK++   ++ RW+D  Y +  LG + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG + +I+E+DEV++    GR G ++GD
Sbjct:    4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGD 113          

HSP 2 Score: 36.1946 bits (82), Expect = 1.069e-29
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = -3
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPGVRFKVV V+ VSL  +   +KEKP
Sbjct:  113 DIPGVRFKVVAVNNVSLEEMVSGRKEKP 140          
The following BLAST results are available for this feature:
BLAST of CX672135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_NATPD5.857e-3157.2730S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_THEPD9.909e-3153.1530S ribosomal protein S12P OS=Thermofilum pendens ... [more]
RS12_IGNH41.680e-3051.8230S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_SULAC2.188e-3050.4530S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_SULTO3.711e-3050.4530S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_ARCFU4.844e-3054.0530S ribosomal protein S12P OS=Archaeoglobus fulgid... [more]
RS12_HYPBU6.292e-3052.7330S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_METBU8.213e-3050.9130S ribosomal protein S12P OS=Methanococcoides bur... [more]
RS12_UNCMA1.069e-2955.4530S ribosomal protein S12P OS=Uncultured methanoge... [more]
RS12_METTP1.069e-2950.0030S ribosomal protein S12P OS=Methanosaeta thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672135 ID=CX672135; Name=CX672135; organism=Citrus sinensis; type=EST; length=725bp
TCATAAGGAGATAGATCTTATACAGTAATGGTATTTTTCTAACAGAACAA
CGGCAGTCAACAAACCACTCAAGTAGAAGAGACAGATACTAATTTACTAA
TAGTCTCAACAGAGGGAAAAAAACCAAAAAGTTCTCTCAACAGCAGTACA
TGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAGTGCTAA
AAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGT
TTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTT
GACAACCTTAAATCTAACACCAGGAATCTCCCACAGCATGCCCCTTTCGA
CCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAGTTCAAACA
ACCATCGTTTGGTACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCT
GAACTCGAGCACATTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATA
CCGATTTTCTCAAGAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGG
CTTCTTCCATTCATTGCCAAGGTGGGATTTCTTGTATGACTTATCAGCCC
ACCTTTGTCTTCTGCGGTGGCTCTTCAGCTTGCGACCCGCTCCCATTCCA
CGTGTCTTCCCCATGTTGGCGTTACGAAGAGGATTTTTGACTGTAACGAA
CGACTTTGGAGCTTGAGAGTTGCCT
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