CX672135
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.857e-31 Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = -2 Query: 326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649 G A RKLK R++ RW+D Y + G K P G+ +GIVLEK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD Sbjct: 4 GKYAARKLKQDRQKHRWSDSDYARRARGLGKKSDPLEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGD 113 HSP 2 Score: 31.9574 bits (71), Expect = 5.857e-31 Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -3 Query: 247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330 ++ GV +KV KV+GVSL+ L + EKP Sbjct: 113 DLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_THEPD (30S ribosomal protein S12P OS=Thermofilum pendens (strain Hrk 5) GN=rps12p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 9.909e-31 Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = -2 Query: 326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652 RGM A RKL+ R++ RW+D YK+ L + K P G+ A+GIV+EK+GIE++QPNSA+RKC RVQL+KNGK + AF+P DG L ++ E+DEV+I G G +G A GD Sbjct: 8 RGMFAARKLELKRKKFRWSDLEYKRRILQLKKKVDPLEGAPQARGIVVEKVGIESRQPNSAVRKCVRVQLLKNGKVVTAFLPGDGALLFVNEHDEVVIEGIGGPEGRAYGD 118 HSP 2 Score: 38.1206 bits (87), Expect = 9.909e-31 Identity = 15/28 (53.57%), Postives = 24/28 (85.71%), Query Frame = -3 Query: 247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330 ++PGVR+KV+KV+GVSL + + +K+KP Sbjct: 118 DLPGVRWKVIKVNGVSLKEILRGRKQKP 145
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.680e-30 Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = -2 Query: 326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649 G+ A RKL+ R + RW+ + +K+ L + K P G+ A+GIVLEK+G+EA++PNSA+RKC RVQL+KNGK + AFVP DG LN I E+DEV+I G G +G ++GD Sbjct: 9 GLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGD 118 HSP 2 Score: 40.817 bits (94), Expect = 1.680e-30 Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = -3 Query: 247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330 +IPGVR+KVV V+GVSL A+ K KK+KP Sbjct: 118 DIPGVRYKVVLVNGVSLDAILKGKKQKP 145
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 2.188e-30 Identity = 56/111 (50.45%), Postives = 81/111 (72.97%), Query Frame = -2 Query: 326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652 +G+ A RKL+ R + W+ +S+K+ L + K P G+ A+GIVLEK+GIE++QPNSA+RK RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG G G ++GD Sbjct: 8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGD 118 HSP 2 Score: 42.3578 bits (98), Expect = 2.188e-30 Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = -3 Query: 247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330 ++PGVR+KVV V+GVSL AL+K KK+KP Sbjct: 118 DLPGVRYKVVMVNGVSLDALYKGKKQKP 145
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.711e-30 Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = -2 Query: 326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652 +GM A RKL+ R + RW + +K+ L + K P G+ A+G+VLEK+GIE++QPNSA+RK RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG G G ++GD Sbjct: 8 KGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGD 118 HSP 2 Score: 41.9726 bits (97), Expect = 3.711e-30 Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = -3 Query: 247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330 ++PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 118 DLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 4.844e-30 Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = -2 Query: 326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652 RG+ A RKL +R++ RW+D+ + + LG K P G+ A+GIVLEKIGIEA+QPNSAIRK RVQLIKNG++I AF P DG +N+I+E+DEV++ GR G ++GD Sbjct: 3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGD 113 HSP 2 Score: 35.039 bits (79), Expect = 4.844e-30 Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = -3 Query: 250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330 +IPGVR+KVVKV+ SL L + +KEK Sbjct: 113 DIPGVRYKVVKVNNTSLRELVRGRKEK 139
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.292e-30 Identity = 58/110 (52.73%), Postives = 80/110 (72.73%), Query Frame = -2 Query: 326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649 G+ A RKL+ R + RW+++ +K LG + K P G+ A+GIVLEK+G+EA+QPNSA+RKC RVQLIKNG+ + AFVP DG L ++E+DEVLI G G +G ++GD Sbjct: 9 GLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGD 118 HSP 2 Score: 38.5058 bits (88), Expect = 6.292e-30 Identity = 16/29 (55.17%), Postives = 25/29 (86.21%), Query Frame = -3 Query: 244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330 +IPGVR++VV V+GVSL A+ + +K+KP+ Sbjct: 118 DIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 8.213e-30 Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = -2 Query: 326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649 G A +L+ R+ RW D Y + LG + K P +G+ +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG++ AF P DG +N+I+E+DEV + GR G A+GD Sbjct: 4 GKYAAHRLQQVRKDARWKDTGYSRRTLGLDIKSDPLSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGD 113 HSP 2 Score: 38.891 bits (89), Expect = 8.213e-30 Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = -3 Query: 244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342 G + +IPGVRFKV+ V+ VSL + +KEKPR Sbjct: 109 GAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.069e-29 Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = -2 Query: 326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649 G A RKL R+ RW+D+ Y + L +E P G+ AKGIVLEK+G+EAKQPNSAIRKC R+QLIKNG++I AF P DG +N+I+E+DEV I G GR G + GD Sbjct: 4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGD 113 HSP 2 Score: 34.2686 bits (77), Expect = 1.069e-29 Identity = 16/32 (50.00%), Postives = 22/32 (68.75%), Query Frame = -3 Query: 247 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKP 342 G +IPGVRF+V KV+ VSL + K++KP Sbjct: 109 GSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 1.069e-29 Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = -2 Query: 326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649 G+ A RK++ ++ RW+D Y + LG + K P G+ A+GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG + +I+E+DEV++ GR G ++GD Sbjct: 4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGD 113 HSP 2 Score: 36.1946 bits (82), Expect = 1.069e-29 Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330 +IPGVRFKVV V+ VSL + +KEKP Sbjct: 113 DIPGVRFKVVAVNNVSLEEMVSGRKEKP 140 The following BLAST results are available for this feature:
BLAST of CX672135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX672135 ID=CX672135; Name=CX672135; organism=Citrus sinensis; type=EST; length=725bpback to top |