CX672135

Overview
NameCX672135
Unique NameCX672135
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:37..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_AERPE (30S ribosomal protein S12P OS=Aeropyrum pernix GN=rps12p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.809e-29
Identity = 54/110 (49.09%), Postives = 78/110 (70.91%), Query Frame = -2 
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A RKL+  R + RW+ + ++   L  + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQL+KN K + AFVP DG + Y++E+DEV+I G  G +G ++GD
Sbjct:    9 GLFAARKLRRKRLKFRWSQREFRIRMLDLKRKYDPLEGAPMARGIVLEKVGVEARQPNSALRKCVRVQLVKNKKVVTAFVPRDGGILYVDEHDEVIIEGIGGPRGRSMGD 118

HSP 2 Score: 42.3578 bits (98), Expect = 1.809e-29
Identity = 19/29 (65.52%), Postives = 26/29 (89.66%), Query Frame = -3 
Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVR++VV V+GVSL AL++ KK+KPR
Sbjct:  118 DIPGVRYRVVMVNGVSLKALWEGKKQKPR 146
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.813e-29
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = -2 
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ A +KLK +R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG + +I+E+DEV+I G  G  G ++GD
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGD 112

HSP 2 Score: 31.5722 bits (70), Expect = 1.813e-29
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = -3 
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            +IPGVR+KV KV+ V+L  +   K EKP
Sbjct:  112 DIPGVRWKVSKVNNVALSEMVSGKIEKP 139
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METMJ (30S ribosomal protein S12P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.813e-29
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = -2 
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A RKLK      RW D  Y +  LG + K  P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G + GD
Sbjct:    4 GKFAARKLKRDANNNRWHDTGYARRQLGLDVKADPLEGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSKGD 113

HSP 2 Score: 36.1946 bits (82), Expect = 1.813e-29
Identity = 17/29 (58.62%), Postives = 21/29 (72.41%), Query Frame = -3 
Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVRF V KV+ VSL  +   +KEKPR
Sbjct:  113 DIPGVRFVVTKVNNVSLREMVTGRKEKPR 141
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.067e-29
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = -2 
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G+ A RKL+  R + R + + YK   L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RKC RVQL++NG+ + AFVP DG +N+I+E+DEV+I G  G  G ++GD
Sbjct:    8 KGIYAARKLRLKRLKFRRSQRKYKTKILKLKEKYDPLGGAPMARGIVLEKVGIESRQPNSAVRKCVRVQLVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGD 118

HSP 2 Score: 41.9726 bits (97), Expect = 3.067e-29
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = -3 
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:  118 DLPGVRYKVIMVNGVSLDALYKGKKQKP 145
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.213e-29
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = -2 
Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G  A RKLK  R+  RW+D  Y +   G  E      G+   +GIVLEK+GIEAKQPNSAIRKC RVQLIKNG+++ AF P DG +++I+E+DEV IAG  G KG A+GD
Sbjct:    4 GKYAARKLKKDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGD 113

HSP 2 Score: 29.6462 bits (65), Expect = 5.213e-29
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = -3 
Query:  247 EIPGVRFKVVKVSGVSLLALFKEKKEKP 330
            ++  V +KV KV+GVSL+ L +   EKP
Sbjct:  113 DLSAVNYKVEKVNGVSLIELVRGNAEKP 140
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.213e-29
Identity = 58/111 (52.25%), Postives = 74/111 (66.67%), Query Frame = -2 
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GD
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGD 113

HSP 2 Score: 36.965 bits (84), Expect = 5.213e-29
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = -3 
Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:  109 GAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METBF (30S ribosomal protein S12P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps12p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.838e-29
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -2 
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  A   LK  R+  RW D SY +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GD
Sbjct:    3 KGKYAANILKQTRKNARWKDTSYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGD 113

HSP 2 Score: 33.4982 bits (75), Expect = 8.838e-29
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = -3 
Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPGVRF+V  V+ VSL  +   + EKPR
Sbjct:  109 GAMGDIPGVRFRVTAVNNVSLNQMVIGRLEKPR 141
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METMA (30S ribosomal protein S12P OS=Methanosarcina mazei GN=rps12p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.838e-29
Identity = 57/111 (51.35%), Postives = 74/111 (66.67%), Query Frame = -2 
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  A   LK  R+  RW D  Y +  LG N    P  G+   +GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GD
Sbjct:    3 KGKYAANILKQTRKDARWKDTYYGRRVLGLNVKADPLGGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVERIGGRMGGAMGD 113

HSP 2 Score: 36.5798 bits (83), Expect = 8.838e-29
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = -3 
Query:  244 GMLWEIPGVRFKVVKVSGVSLLALFKEKKEKPR 342
            G + +IPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:  109 GAMGDIPGVRFKVIAVNNVSLNQLVIGRLEKPR 141
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METHJ (30S ribosomal protein S12P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps12p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.498e-28
Identity = 59/111 (53.15%), Postives = 78/111 (70.27%), Query Frame = -2 
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  A RKLK    R RW+D  + ++  G + K  P  G+   +GIVLEKIG+EAKQPNSAIRKC RVQLIKNG++++AF   DG +N+I+E+DEV I G  GR G ++GD
Sbjct:    3 QGKFAARKLKRDSARFRWSDPHFARTAGGLKLKSDPLEGAPQGRGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGRQVSAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGD 113

HSP 2 Score: 33.8834 bits (76), Expect = 1.498e-28
Identity = 17/29 (58.62%), Postives = 20/29 (68.97%), Query Frame = -3 
Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVRF V KV+ V L  L   +KEKPR
Sbjct:  113 DIPGVRFVVTKVNNVCLHELVIGRKEKPR 141
[Close]
BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.951e-28
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = -2 
Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  A RKL    ++ RW+DK+Y +  L  + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GD
Sbjct:    3 QGKFAARKLVRDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGD 113

HSP 2 Score: 30.0314 bits (66), Expect = 1.951e-28
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = -3 
Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVR+ V  V+ V L  +   +KEKPR
Sbjct:  113 DIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141
The following BLAST results are available for this feature:
BLAST of CX672135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_AERPE1.809e-2949.0930S ribosomal protein S12P OS=Aeropyrum pernix GN=... [more]
RS12_METS31.813e-2953.6430S ribosomal protein S12P OS=Methanobrevibacter s... [more]
RS12_METMJ1.813e-2953.6430S ribosomal protein S12P OS=Methanoculleus maris... [more]
RS12_SULSO3.067e-2949.5530S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_HALMO5.213e-2955.4530S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_METAC5.213e-2952.2530S ribosomal protein S12P OS=Methanosarcina aceti... [more]
RS12_METBF8.838e-2952.2530S ribosomal protein S12P OS=Methanosarcina barke... [more]
RS12_METMA8.838e-2951.3530S ribosomal protein S12P OS=Methanosarcina mazei... [more]
RS12_METHJ1.498e-2853.1530S ribosomal protein S12P OS=Methanospirillum hun... [more]
RS12_METB61.951e-2853.1530S ribosomal protein S12P OS=Methanoregula boonei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672135 ID=CX672135; Name=CX672135; organism=Citrus sinensis; type=EST; length=725bp
TCATAAGGAGATAGATCTTATACAGTAATGGTATTTTTCTAACAGAACAA
CGGCAGTCAACAAACCACTCAAGTAGAAGAGACAGATACTAATTTACTAA
TAGTCTCAACAGAGGGAAAAAAACCAAAAAGTTCTCTCAACAGCAGTACA
TGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAGTGCTAA
AAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGT
TTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTT
GACAACCTTAAATCTAACACCAGGAATCTCCCACAGCATGCCCCTTTCGA
CCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAGTTCAAACA
ACCATCGTTTGGTACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCT
GAACTCGAGCACATTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATA
CCGATTTTCTCAAGAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGG
CTTCTTCCATTCATTGCCAAGGTGGGATTTCTTGTATGACTTATCAGCCC
ACCTTTGTCTTCTGCGGTGGCTCTTCAGCTTGCGACCCGCTCCCATTCCA
CGTGTCTTCCCCATGTTGGCGTTACGAAGAGGATTTTTGACTGTAACGAA
CGACTTTGGAGCTTGAGAGTTGCCT
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