CX672135 | Citrus Genome Database

Overview


Name	CX672135
Unique Name	CX672135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	725

Libraries


Library Name	Type
Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.083e-25
Identity = 57/111 (51.35%), Postives = 73/111 (65.77%), Query Frame = -2

Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  AGRKL   RR  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GD
Sbjct:    8 KGEFAGRKLLLKRRASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGD 118

HSP 2 Score: 28.1054 bits (61), Expect = 4.083e-25
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KVV V   S+  L + ++EK
Sbjct:  118 DIPGVRYKVVMVGKNSIRELVRGRQEK 144

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METLZ (30S ribosomal protein S12P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps12p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.095e-25
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = -2

Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  A R L    ++ RW+D  Y +  L  + K  P  G+   + IVLEK+G+EAKQPNSAIRKC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GD
Sbjct:    3 QGKFAARNLVRTAKKFRWSDSVYSRRALKLKLKADPLEGAPIGRAIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVTICGIGGRAGRSMGD 113

HSP 2 Score: 29.261 bits (64), Expect = 4.095e-25
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = -3

Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVRF V  V+GVSL  L   + EK R
Sbjct:  113 DIPGVRFVVSGVNGVSLNELVIGRAEKAR 141

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.917e-25
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = -2

Query:  350 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG 652
            RG  AGRKL+  R+  RW D +Y +  L  + K  P  G+  A+GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+ + AF P +  +N+I+E+DEV+I G G
Sbjct:    8 RGEFAGRKLRLKRKWCRWHDYNYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIG 109

HSP 2 Score: 27.335 bits (59), Expect = 6.917e-25
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGV++KV+ V   SL  L + ++EK
Sbjct:  119 DIPGVKYKVIMVGRNSLRELVRGRQEK 145

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.004e-25
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = -2

Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GD
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGD 118

HSP 2 Score: 27.7202 bits (60), Expect = 9.004e-25
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KVV V   S+  L + ++EK
Sbjct:  118 DIPGVRYKVVLVGKNSIRELVRGRQEK 144

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.004e-25
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = -2

Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  AGRKL   R+  RW    Y    L  + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GD
Sbjct:    8 KGEFAGRKLLLKRKASRWHHYKYVNKALSLKLKADPLEGAPMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGD 118

HSP 2 Score: 28.1054 bits (61), Expect = 9.004e-25
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KVV V   S+  L + ++EK
Sbjct:  118 DIPGVRYKVVMVGKNSIRELVRGRQEK 144

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.525e-24
Identity = 56/111 (50.45%), Postives = 73/111 (65.77%), Query Frame = -2

Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  AGRKL   R+  RW    Y    LG + K  P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GD
Sbjct:    8 KGEFAGRKLLLKRKATRWQHYKYVNRELGLKVKADPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGD 118

HSP 2 Score: 26.9498 bits (58), Expect = 1.525e-24
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = -3

Query:  250 EIPGVRFKVVKVSGVSLLALFKEKKEK 330
            +IPGVR+KV+ V   S+  L + ++EK
Sbjct:  118 DIPGVRYKVLMVGKNSIRELVRGRQEK 144

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.584e-24
Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = -2

Query:  326 RGMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 652
            +G  AGRK+   R+  RW    Y    L   E   P  G+   +GIV+EK+G+EAKQPNSAIRKC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GD
Sbjct:    8 KGEFAGRKIVLKRKESRWHHYKYVNKALKLKEKSDPLGGAPMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGD 118

HSP 2 Score: 29.261 bits (64), Expect = 2.584e-24
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = -3

Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVRF+VV V   S+  L + ++EK R
Sbjct:  118 DIPGVRFRVVMVGKNSMRELVRGRQEKVR 146

[Close]

BLAST of CX672135 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.947e-23
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = -2

Query:  326 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGD 649
            G+ AGRKLK  R++ RW D  Y +  L  + K  P  G+  A GIVLEK  +E +QPNS   K  RVQL KNGK + AF P DG +  I+E+DEVLI G  GR+G ++GD
Sbjct:    5 GLFAGRKLKKIRKKFRWNDYRYVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGD 114

HSP 2 Score: 29.6462 bits (65), Expect = 7.947e-23
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = -3

Query:  244 EIPGVRFKVVKVSGVSLLALFKEKKEKPR 330
            +IPGVR+KV  V+G  L  L K K EK R
Sbjct:  114 DIPGVRYKVYLVNGQPLELLRKGKIEKAR 142

The following BLAST results are available for this feature:

BLAST of CX672135 vs. ExPASy Swiss-Prot

BLAST of CX672135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
RS12_METM7	4.083e-25	51.35	30S ribosomal protein S12P OS=Methanococcus maripa...	[more]
RS12_METLZ	4.095e-25	49.55	30S ribosomal protein S12P OS=Methanocorpusculum l...	[more]
RS12_METJA	6.917e-25	53.92	30S ribosomal protein S12P OS=Methanocaldococcus j...	[more]
RS12_METMP	9.004e-25	50.45	30S ribosomal protein S12P OS=Methanococcus maripa...	[more]
RS12_METM5	9.004e-25	50.45	30S ribosomal protein S12P OS=Methanococcus maripa...	[more]
RS12_METVS	1.525e-24	50.45	30S ribosomal protein S12P OS=Methanococcus vannie...	[more]
RS12_META3	2.584e-24	48.65	30S ribosomal protein S12P OS=Methanococcus aeolic...	[more]
RS12_NANEQ	7.947e-23	50.00	30S ribosomal protein S12P OS=Nanoarchaeum equitan...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS10_15B11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B11-D21-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX672135 ID=CX672135; Name=CX672135; organism=Citrus sinensis; type=EST; length=725bp
TCATAAGGAGATAGATCTTATACAGTAATGGTATTTTTCTAACAGAACAA
CGGCAGTCAACAAACCACTCAAGTAGAAGAGACAGATACTAATTTACTAA
TAGTCTCAACAGAGGGAAAAAAACCAAAAAGTTCTCTCAACAGCAGTACA
TGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAGTGCTAA
AAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGATCTTGGT
TTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGAAACCTT
GACAACCTTAAATCTAACACCAGGAATCTCCCACAGCATGCCCCTTTCGA
CCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAGTTCAAACA
ACCATCGTTTGGTACGAAAGCTGCAATCTTCTTTCCATTCTTGATCAGCT
GAACTCGAGCACATTTTCTGATAGCGGAGTTGGGCTGCTTTGCCTCGATA
CCGATTTTCTCAAGAACAATGCCTTTTGCATGGGAAGAGCCAGCAAATGG
CTTCTTCCATTCATTGCCAAGGTGGGATTTCTTGTATGACTTATCAGCCC
ACCTTTGTCTTCTGCGGTGGCTCTTCAGCTTGCGACCCGCTCCCATTCCA
CGTGTCTTCCCCATGTTGGCGTTACGAAGAGGATTTTTGACTGTAACGAA
CGACTTTGGAGCTTGAGAGTTGCCT