EY664660

Overview
NameEY664660
Unique NameEY664660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTH_RAT (Actin, gamma-enteric smooth muscle OS=Rattus norvegicus GN=Actg2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  342 IGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTH_MOUSE (Actin, gamma-enteric smooth muscle OS=Mus musculus GN=Actg2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  342 IGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTH_HUMAN (Actin, gamma-enteric smooth muscle OS=Homo sapiens GN=ACTG2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  342 IGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTH_CHICK (Actin, gamma-enteric smooth muscle OS=Gallus gallus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  342 IGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTH_BOVIN (Actin, gamma-enteric smooth muscle OS=Bos taurus GN=ACTG2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  342 IGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 376
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTC_XENLA (Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN=actc1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTC_TAKRU (Actin, alpha cardiac OS=Takifugu rubripes PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTC_RAT (Actin, alpha cardiac muscle 1 OS=Rattus norvegicus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTC_MOUSE (Actin, alpha cardiac muscle 1 OS=Mus musculus GN=Actc1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTC_HUMAN (Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=ACTC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of EY664660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
ACTH_RAT3.937e-1188.57Actin, gamma-enteric smooth muscle OS=Rattus norve... [more]
ACTH_MOUSE3.937e-1188.57Actin, gamma-enteric smooth muscle OS=Mus musculus... [more]
ACTH_HUMAN3.937e-1188.57Actin, gamma-enteric smooth muscle OS=Homo sapiens... [more]
ACTH_CHICK3.937e-1188.57Actin, gamma-enteric smooth muscle OS=Gallus gallu... [more]
ACTH_BOVIN3.937e-1188.57Actin, gamma-enteric smooth muscle OS=Bos taurus G... [more]
ACTC_XENLA3.937e-1188.57Actin, alpha cardiac muscle 1 OS=Xenopus laevis GN... [more]
ACTC_TAKRU3.937e-1188.57Actin, alpha cardiac OS=Takifugu rubripes PE=2 SV=... [more]
ACTC_RAT3.937e-1188.57Actin, alpha cardiac muscle 1 OS=Rattus norvegicus... [more]
ACTC_MOUSE3.937e-1188.57Actin, alpha cardiac muscle 1 OS=Mus musculus GN=A... [more]
ACTC_HUMAN3.937e-1188.57Actin, alpha cardiac muscle 1 OS=Homo sapiens GN=A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-069-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664660 ID=EY664660; Name=EY664660; organism=Citrus sinensis; type=EST; length=622bp
CCACGCGTCCGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGAT
GTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACA
GGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTC
CATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACA
TGGAGAAGTGCTAAGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTG
ATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTA
CTCAACCGTCTTCCTTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTT
TTTCTTTTTTTTCCTTTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAG
ATGAAGAGTGGTTGTGATGCTTTTCTATTTCATTTTCTAAATTTTCATAT
TTGAAGGTTTTTTTTCTCCCCCTCTCAAAAGGAACATTAATGTTAATAGC
TATTGTATGAGAAAACTTTAATTAGTGTCAGCTTGCAGTCATAAATTTGG
TTATTAAAATATATTTAATACTTGTTTGAGAGCTTTCAATGATGAATCAA
TGTCTTATTTCANNNAAAAAAA
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