EY664660

Overview
NameEY664660
Unique NameEY664660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTC_CHICK (Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=ACTC1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTC_BOVIN (Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACTC1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTB_CRIGR (Actin, cytoplasmic 1 OS=Cricetulus griseus GN=ACTB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQ+MWISK EYDESGPSIVHRKCF
Sbjct:  341 IGGSILASLSTFQEMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTA_RAT (Actin, aortic smooth muscle OS=Rattus norvegicus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTA_RABIT (Actin, aortic smooth muscle OS=Oryctolagus cuniculus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTA_MOUSE (Actin, aortic smooth muscle OS=Mus musculus GN=Acta2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTA_HUMAN (Actin, aortic smooth muscle OS=Homo sapiens GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTA_CHICK (Actin, aortic smooth muscle OS=Gallus gallus GN=ACTA2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACTA_BOVIN (Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of EY664660 vs. ExPASy Swiss-Prot
Match: ACT3_DIPDE (Actin-3 OS=Diphyllobothrium dendriticum GN=ACT3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    7 VRGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 111
            + GSILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct:  343 IGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of EY664660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
ACTC_CHICK3.937e-1188.57Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=... [more]
ACTC_BOVIN3.937e-1188.57Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACT... [more]
ACTB_CRIGR3.937e-1188.57Actin, cytoplasmic 1 OS=Cricetulus griseus GN=ACTB... [more]
ACTA_RAT3.937e-1188.57Actin, aortic smooth muscle OS=Rattus norvegicus G... [more]
ACTA_RABIT3.937e-1188.57Actin, aortic smooth muscle OS=Oryctolagus cunicul... [more]
ACTA_MOUSE3.937e-1188.57Actin, aortic smooth muscle OS=Mus musculus GN=Act... [more]
ACTA_HUMAN3.937e-1188.57Actin, aortic smooth muscle OS=Homo sapiens GN=ACT... [more]
ACTA_CHICK3.937e-1188.57Actin, aortic smooth muscle OS=Gallus gallus GN=AC... [more]
ACTA_BOVIN3.937e-1188.57Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2... [more]
ACT3_DIPDE3.937e-1188.57Actin-3 OS=Diphyllobothrium dendriticum GN=ACT3 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-069-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664660 ID=EY664660; Name=EY664660; organism=Citrus sinensis; type=EST; length=622bp
CCACGCGTCCGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGAT
GTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACA
GGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTC
CATTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACA
TGGAGAAGTGCTAAGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTG
ATGTTATTATACAAGCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTA
CTCAACCGTCTTCCTTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTT
TTTCTTTTTTTTCCTTTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAG
ATGAAGAGTGGTTGTGATGCTTTTCTATTTCATTTTCTAAATTTTCATAT
TTGAAGGTTTTTTTTCTCCCCCTCTCAAAAGGAACATTAATGTTAATAGC
TATTGTATGAGAAAACTTTAATTAGTGTCAGCTTGCAGTCATAAATTTGG
TTATTAAAATATATTTAATACTTGTTTGAGAGCTTTCAATGATGAATCAA
TGTCTTATTTCANNNAAAAAAA
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