CX672124

Overview
NameCX672124
Unique NameCX672124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX672124 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.978e-34
Identity = 88/258 (34.11%), Postives = 122/258 (47.29%), Query Frame = 1
Query:   94 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVXAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 852
            G G   G    G G  G  +  +++   F  +   +N A   C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                CYI +++ AS D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V    L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:   68 GGGGGGGGGGGGGGGSGVSVESVVTEAFFNGI---KNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CX672124 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.816e-34
Identity = 83/263 (31.56%), Postives = 126/263 (47.91%), Query Frame = 1
Query:   91 CGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVXAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 852
            CG G   G   +G G  G       +  +++   F  +   +N A   C  + FYT  AF+ A + +PGF + G++   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG      +  R+G++  +C + G+ PG NL C
Sbjct:   44 CGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI---KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CX672124 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.674e-33
Identity = 85/262 (32.44%), Postives = 120/262 (45.80%), Query Frame = 1
Query:   76 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVXAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 852
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V      G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CX672124 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.158e-32
Identity = 81/257 (31.52%), Postives = 122/257 (47.47%), Query Frame = 1
Query:   94 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVXAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 852
            G G   G    G G+ G  +  +++   F  +   +N A   C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V      G+G T   ING +EC       +  R+G++  +C +  + PG NL C
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI---KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CX672124 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 84/258 (32.56%), Postives = 119/258 (46.12%), Query Frame = 1
Query:   91 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVXAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 852
            CG+G   G   T        +   I    F + +  + D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:   47 CGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CX672124 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  619 MTAQPPKPSCHEVIIDEWKPSANDVXAGRLPGYGLTTNIINGGIEC 756
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CX672124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI5_ORYSJ1.978e-3434.11Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE9.816e-3431.56Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ1.674e-3332.44Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE3.158e-3231.52Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU9.188e-3232.56Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY1.801e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_15B04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B04-D7-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672124 ID=CX672124; Name=CX672124; organism=Citrus sinensis; type=EST; length=852bp
ATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTC
TCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCG
GCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAA
CTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAG
AAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTA
TAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACC
ATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCTTGGGGATATT
GCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTAC
TGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACT
CACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACT
TGTTGAACAATCCAGACCTACTTGCCACTGATCCAGTACTATCATTCAAG
TCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCA
CGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTANACGCCG
GCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATT
GAATGTGGCTACGTTGGGAATGACGCTGTACGTAACCGTATTGGGTTCTT
TACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATT
GC
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