CX672120

Overview
NameCX672120
Unique NameCX672120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_THENE (10 kDa chaperonin OS=Thermotoga neapolitana GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 41/90 (45.56%), Postives = 62/90 (68.89%), Query Frame = 2 
Query:  296 PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            PLG+R+L+K    E+KT+GGI LP +A+ KP   EVVAV  GK   + K DI V  G +VI+SKYAGTE++ +  +++I+  +D++  +E
Sbjct:    6 PLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAV--GKIEDEEKFDIKV--GDKVIFSKYAGTEIKIDDEDYIIIDVNDILAKIE 91
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_STAS1 (10 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 36/93 (38.71%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            LKPL +RV I+ +E E+TT  G++LT+++KEK + GT+IAVG G + ++G+R    +  G+ V++ +YAG + K  D T Y+ +   +++A++
Sbjct:    2 LKPLGNRVIIQKSEQEQTTKSGIVLTDSAKEKSNEGTIIAVGAGRILKDGSRVAPEVNEGDKVVFQQYAGTEVKRGDET-YLIVNEEDILAII 93

HSP 2 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 33/94 (35.11%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV-GKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILET 568
            +KPLG+RV+++    E+ T  GI L  +A+ K   G ++AVG G+ +   +++   V  G +V++ +YAGTE++     +LIV E+D++ I+E+
Sbjct:    2 LKPLGNRVIIQKSEQEQTTKSGIVLTDSAKEKSNEGTIIAVGAGRILKDGSRVAPEVNEGDKVVFQQYAGTEVKRGDETYLIVNEEDILAIIES 95
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_STAES (10 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 36/93 (38.71%), Postives = 62/93 (66.67%), Query Frame = 2 
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            LKPL +RV I+  E E+TT  G++LT+++KEK + G +IAVG G L + G +    ++ G+T+++ +YAG + K  D T Y+ L   +++A++
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKT-YLILNEEDILAII 93

HSP 2 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 32/93 (34.41%), Postives = 59/93 (63.44%), Query Frame = 2 
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G ++AVG+G+ +    ++   V  G  +++ +YAGTE++     +LI+ E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE 94
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_STAEQ (10 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 36/93 (38.71%), Postives = 62/93 (66.67%), Query Frame = 2 
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            LKPL +RV I+  E E+TT  G++LT+++KEK + G +IAVG G L + G +    ++ G+T+++ +YAG + K  D T Y+ L   +++A++
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKT-YLILNEEDILAII 93

HSP 2 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 32/93 (34.41%), Postives = 59/93 (63.44%), Query Frame = 2 
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G ++AVG+G+ +    ++   V  G  +++ +YAGTE++     +LI+ E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE 94
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_PSEMY (10 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 36/93 (38.71%), Postives = 63/93 (67.74%), Query Frame = 2 
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G V+AVG G + E G  +PL++  G+ V++  Y+G++    DG + + +  +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNQGEVVAVGTGKVLENGEVRPLAVKVGDKVVFGPYSGSNTVKVDGEDLLVMGENEILAVI 95

HSP 2 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 35/94 (37.23%), Postives = 63/94 (67.02%), Query Frame = 2 
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 565
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG GK +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNQGEVVAVGTGKVLENGEVRPLAVKVGDKVVFGPYSGSNTVKVDGEDLLVMGENEILAVIE 96
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_WOLPM (10 kDa chaperonin OS=Wolbachia pipientis wMel GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 37/94 (39.36%), Postives = 62/94 (65.96%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E N    ++++E D++ +++
Sbjct:    5 SLNVLDDSVL--IKPISEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERVTLTVKAGDKVFYRQWAGTEIEHNNEKLIVMKESDILAVIK 96
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_KOSOT (10 kDa chaperonin OS=Kosmotoga olearia (strain TBF 19.5.1) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 36/90 (40.00%), Postives = 60/90 (66.67%), Query Frame = 2 
Query:  296 PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            PLG+R+L+K    E++T+GGI LP  A+ KP   EV+ +G      K   DI +K G +VI+SKYAGTE++ +  +++++ +DD++  +E
Sbjct:    5 PLGERLLIKPIKEEKRTEGGIVLPDTAKEKPMKAEVIEIG------KDVEDIDIKVGDKVIFSKYAGTEIKIDDEDYILIDQDDILAKVE 88
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_AMOPS (10 kDa chaperonin OS=Amoeba proteus symbiotic bacterium GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 2 
Query:  290 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            I+PL DRV+V+    E  T G I +P +A  KP  GE++A+G GK +    +    VK G  V++ KY+GTE++  G   +++REDD++G++E
Sbjct:    3 IRPLHDRVVVRRLEEERTTAGWIVIPDSATEKPMRGEIIAIGAGKILDNGDVRAFVVKVGDVVLFGKYSGTEVKVAGQELVVMREDDIMGVIE 95

HSP 2 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 30/93 (32.26%), Postives = 59/93 (63.44%), Query Frame = 2 
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            ++PL+DRV ++  E E TTAG +++ +++ EKP  G +IA+G G + + G+ +   +  G+ V++ KY+G + K + G   + +R  ++M V+
Sbjct:    3 IRPLHDRVVVRRLEEERTTAGWIVIPDSATEKPMRGEIIAIGAGKILDNGDVRAFVVKVGDVVLFGKYSGTEVKVA-GQELVVMREDDIMGVI 94
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_ALCBS (10 kDa chaperonin OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 36/93 (38.71%), Postives = 63/93 (67.74%), Query Frame = 2 
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            ++PL+DRV ++  E E  +AGG++L  ++ EKPS G VIAVG G + E G+ +PL +  G+TV++ +Y+G+  K  +G   + +  +E++AV+
Sbjct:    3 IRPLHDRVLVRREEEETKSAGGIVLPGSAAEKPSRGEVIAVGNGKITENGDVRPLDVKAGDTVIFGQYSGSTVK-VEGEELLIMSEAEILAVV 94

HSP 2 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            SI+PL DRVLV+ +  E K+ GGI LP +A  KP  GEV+AVG GK      +  + VK G  VI+ +Y+G+ ++  G   LI+ E +++ ++E
Sbjct:    2 SIRPLHDRVLVRREEEETKSAGGIVLPGSAAEKPSRGEVIAVGNGKITENGDVRPLDVKAGDTVIFGQYSGSTVKVEGEELLIMSEAEILAVVE 95
[Close]
BLAST of CX672120 vs. ExPASy Swiss-Prot
Match: CH10_ACIAC (10 kDa chaperonin OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  287 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 565
            S++PL DRV+VK    E  T  GI +P  A  KP  G V+AVG GK   K +L + SVK G +V++ KY+G  ++ NG   L+++EDD+  ++E
Sbjct:    2 SLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGVVLAVGPGKKNDKGELSVLSVKVGDRVLFGKYSGQTVKVNGDELLVMKEDDLFAVVE 95

HSP 2 Score: 73.9442 bits (180), Expect = 1.337e-12
Identity = 35/93 (37.63%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:  584 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 862
            L+PL+DRV +K  E+E TTA G+++ + + EKP  G V+AVGPG  +++G    LS+  G+ V++ KY+G   K  +G   + ++  ++ AV+
Sbjct:    3 LRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGVVLAVGPGKKNDKGELSVLSVKVGDRVLFGKYSGQTVK-VNGDELLVMKEDDLFAVV 94
The following BLAST results are available for this feature:
BLAST of CX672120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_THENE2.062e-1345.5610 kDa chaperonin OS=Thermotoga neapolitana GN=gro... [more]
CH10_STAS12.062e-1338.7110 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]
CH10_STAES2.062e-1338.7110 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH10_STAEQ2.062e-1338.7110 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH10_PSEMY2.062e-1338.7110 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH10_WOLPM3.517e-1339.3610 kDa chaperonin OS=Wolbachia pipientis wMel GN=g... [more]
CH10_KOSOT3.517e-1340.0010 kDa chaperonin OS=Kosmotoga olearia (strain TBF... [more]
CH10_AMOPS3.517e-1339.7810 kDa chaperonin OS=Amoeba proteus symbiotic bact... [more]
CH10_ALCBS3.517e-1338.7110 kDa chaperonin OS=Alcanivorax borkumensis (stra... [more]
CH10_ACIAC3.517e-1342.5510 kDa chaperonin OS=Acidovorax avenae subsp. citr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_15B02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-15B02-D3-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX672120 ID=CX672120; Name=CX672120; organism=Citrus sinensis; type=EST; length=890bp
CTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTCGCTC
GCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATC
TGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCC
AGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGT
TCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTC
GTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTT
GGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATG
GTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAG
GTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGGACAT
ATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGGACTG
AGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGACGTA
GTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTAATGA
CAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACTGCTGGAGGTT
TGTTGTTGACGGAGGCAAGCAAGGAGAAACCTTCCATTGGAACGGTCATT
GCTGTTGGACCCGGTCCTCTAGATGAGGAAGGTAATAGGAAACCTCTATC
CATTGCACCAGGGAACACGGTGATGTATTCGAAGTATGCAGGGAATGACT
TCAAGGGCAGTGATGGTACCAACTACATTGCTTTAAGAGCTTCTGAAGTG
ATGGCTGTGCTCTCTTAGTTGTCTGTGTTTACTTGAGCGA
back to top